GgaEX6013650 @ galGal4
Exon Skipping
Gene
ENSGALG00000003743 | VPS37B
Description
vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr15:5226402-5234896:+
Coord C1 exon
chr15:5226402-5226513
Coord A exon
chr15:5234002-5234173
Coord C2 exon
chr15:5234814-5234896
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATGCACCTTTCTTCTTGCAGGCC
3' ss Score
10.87
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
CGCCGCCATGGCGCTGGACGCGGGGCGGCTGGAGGGGCTGAGCCTGCAGGAGCTCAGCGCGCTGCTGGACGATGAGGAGCGGCTGCAGGGCATGGCCCTTGAGATGGAAGAG
Seq A exon
GCCCAAAATGTTCAGCACAGCAAGGACATGACACTTGCCAGCAACCGCAGTCTGGCAGAAGGCAATCTTCTGTACCAGCCAAAGTTGGAGTCTTTGAAAGCAACTTTGACTCAGAAATATCAAGAGCTGCAAGTTCTTTTTGAAGCATACCAGATAAAGAAAACAAAATTAG
Seq C2 exon
ACAGACAATCCAGTAATGCCTCACTGGAGACACTGCTAGCACTCCTTCAGACTGAGGGGGCTAAGATTGAGGAAGACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003743-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.224 C2=0.286
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=73.0)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
ENSGALT00000005939fB523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTGCAGGAGCTCAG
R:
CGTGTCTTCCTCAATCTTAGCCC
Band lengths:
154-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]