DreEX0084482 @ danRer10
Exon Skipping
Gene
ENSDARG00000039319 | vps37b
Description
vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-254]
Coordinates
chr5:27401508-27416652:-
Coord C1 exon
chr5:27416548-27416652
Coord A exon
chr5:27409375-27409546
Coord C2 exon
chr5:27401508-27401590
Length
172 bp
Sequences
Splice sites
3' ss Seq
ACTATCCTTCCCTTCTTCAGATT
3' ss Score
10.71
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
ATGGCTGGCTTCGAGAACAAGTTGGGTTCTTATACTTTAACACAGTTAAACGAACTGCTCGAGGATGACGATAAACTCAACAAATTCATCGACGAGTCAGAGGAG
Seq A exon
ATTAAAGGGCTACAGCAAAACAAGGAGACGACTCTAGCTAATAACCGTTTCCTGGCTGAACAGAACCTTTTACTCCAACCCAAACTTGACCACCAAAAGAACGAACTCACCAGACGCTACCGGGGCCTGCAAGAGCTGTATGAGGCTTATCAGCTGCGCAAGTCCACTCTAG
Seq C2 exon
ATGACAGATTAGGAAATACACCGTTGGACACATTGCTTGCACTCCTACAAGCAGAAGGGGCCAAAATTGAGGAAGAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039319_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.143
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=77.1)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGGCTTCGAGAACAAG
R:
CAGTTTCTTCCTCAATTTTGGCCC
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]