HsaEX0070588 @ hg38
Exon Skipping
Gene
ENSG00000139722 | VPS37B
Description
VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr12:122877802-122880994:-
Coord C1 exon
chr12:122880829-122880994
Coord A exon
chr12:122879329-122879505
Coord C2 exon
chr12:122877802-122877964
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATGCACTTCTCACTTCCAGGCC
3' ss Score
10.03
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGCAGTCTGTGCGGGTATGCAGTGCTGCAGTACGAAGTGAATGGCACCCCCTGGAGTTGGGCAGTGCACAACGCTCAGTGCCTTACGTAGGAGGATGGGCTTGACTGAGACTCTGAGCCAGACTCCCTGTGATGATGGTGTCTCCCCCGAGCCTGGCACACAGAG
Seq A exon
GCCTGCGGGAGGGGCAGAGGAGAGGGCTGCCTTGGAGGAAGGGAGGGTTGGAGGACCTGGCCCAGCTGCAGCCGCACCTCAGCGAGGCAACCCGGGGAACACTCCCCATCTCCGCTGTCCCTTTTCATCTTCCTCCTACTGTTGATCCTCATTGCTGAATCCAACCAGAACCTGAGG
Seq C2 exon
AGCCAGCCCGTGATGATGCCTGAAAAAATTTTTTTTGATGTATGAATAGATGAACAAACAAGCACAGAAGAATACAGTGTGAATACAGTGAAGCCAGAGGTGTACTCTGCGAATACATGAGACACCCTTGAGTGGAATGGTTTCAGTAGATGGATTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139722-'3-5,'3-4,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTGCAGTACGAAGTGA
R:
AGTACACCTCTGGCTTCACTGT
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development