HsaEX0070589 @ hg38
Exon Skipping
Gene
ENSG00000139722 | VPS37B
Description
VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr12:122870890-122871998:-
Coord C1 exon
chr12:122871898-122871998
Coord A exon
chr12:122871212-122871396
Coord C2 exon
chr12:122870890-122871061
Length
185 bp
Sequences
Splice sites
3' ss Seq
CAGATTCTAAATCTTTACAGCTG
3' ss Score
6.3
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GGACACACGCTGGGTAAGGAATCGCATGCTGTTGAAACTGACGGTGTGGAAGGAAAGTGAGGTGGCGGCGGCTGGGCTGTGGTAGAGGAAGCCGATCACCA
Seq A exon
CTGTTTACTTCTGCAAGCACAATGGCCGTAGTAAGGAATTCAAGTCACAGCGCAGCCGTGGCAGGGAAGGCTCTGCATGGAGTCACAGGACAAAGCCTGTCCTGGAAACGTGCTGGAAGGAAGTCGGCCTCATTCTTTACGACGGGCAGCAGCTCCAAATGAGAAACCAAGGGGCTTGGCTCTGG
Seq C2 exon
ACACAGAATGTTCAGCTTAACAAAGAAATGACACTTGCCAGCAACCGGAGCCTGGCAGAAGGAAACCTTTTGTACCAGCCCCAGCTGGACACGTTGAAAGCACGCTTGACCCAGAAATACCAGGAACTCCAGGTTCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139722-'8-9,'8-8,9-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.108
Domain overlap (PFAM):
C1:
NA
A:
PF072008=Mod_r=PD(42.0=38.9)
C2:
PF072008=Mod_r=FE(38.0=100)
Main Inclusion Isoform:
ENST00000267202fB7733
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGCTGGGTAAGGAATCG
R:
GGCTTCAAAGAGAACCTGGAGT
Band lengths:
245-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development