HsaALTA1030992-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47838336-47838696:-
Coord C1 exon
chr17:47838531-47838696
Coord A exon
chr17:47838342-47838450
Coord C2 exon
chr17:47838336-47838341
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TTCCATCTGTGCCCCTCTAGGTC
3' ss Score
11.89
Exon sequences
Seq C1 exon
GGGGCATCACGGCAGAGGTGATGATGGGCATCCTCAGAGACAAGGAGAGTGGTATCTGTATGGACTCGGGAGGCTTTCGCACCACGGCCAGCATGGTGTCTGTCCTGCCCCAGGATCCCACGCAGCCCTGCGTGCACTTTCTTACCGCCACGCCAGACCCATCCAG
Seq A exon
GTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAG
Seq C2 exon
ACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295-16-14,16-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(4.0=66.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains