RnoALTA0035292-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84970137-84970562:+
Coord C1 exon
chr10:84970137-84970302
Coord A exon
chr10:84970385-84970486
Coord C2 exon
chr10:84970487-84970562
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCAACCTGTGTCTTAATAGGTC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGAGCATCACAGCAGAGGTGATGATGGACATCCTCAGGAACAAGGAGAGCGGCATCTGCATGGACTCTGGAGGCTTCCGTACCACAGCCAGTATGGTGTCAGTCCTGCCCCAGGATCCCACAAAGCCTTGTGTTCACTTCCTCACTGCCACACCAGACCCATCCAG
Seq A exon
GTCGGTATTCAAACCTTTCATCTTTGAAGTGGGGGTGTCCCAGCCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCCAG
Seq C2 exon
ATTCCAGACTCAGGTGGACCGTCGACATTCACTGTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-14-9,14-8,14-7,14-6-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(6.9=23.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATCACAGCAGAGGTG
R:
CTGCTCGTCCATCAGCCCC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]