MmuALTA1007685-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020877 | Scrn2
Description
secernin 2 [Source:MGI Symbol;Acc:MGI:1343092]
Coordinates
chr11:97033064-97033495:+
Coord C1 exon
chr11:97033064-97033229
Coord A exon
chr11:97033319-97033427
Coord C2 exon
chr11:97033428-97033495
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCAACCTGTGTCTTATTAGGTC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGAACATCACAGCAGAGGTGATGATGGGCATCCTCAGGGACAAGGAGAGCGGCATCTGCATGGACTCCGGAGGCTTCCGCACCACAGCCAGTATGGTATCGGTCCTGCCCCAGGATCCCACAAAGCCCTGTGTCCACTTCCTCACTGCCACCCCAGACCCATCCAG
Seq A exon
GTCGGTATTCAAGCCTTTCATCTTTGAAGTGGGGGTGTCCCAGTCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCACGATTCCAG
Seq C2 exon
ACTCGGGTGGACCGTCGGCACTCACTCTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020877-16-9,16-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.246
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCACAGCAGAGGTG
R:
TCATCCTCCATCAGCCCCAG
Band lengths:
234-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types