HsaALTA1031361-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000141748 | ARL5C
Description
ADP ribosylation factor like GTPase 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr17:39161268-39162858:-
Coord C1 exon
chr17:39162711-39162858
Coord A exon
chr17:39161329-39161351
Coord C2 exon
chr17:39161268-39161328
Length
23 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGCTCCCCTCTGCTGCCCAGTTT
3' ss Score
2.71
Exon sequences
Seq C1 exon
CTTGACCAATGAGGTGGTCCATATGTGTCCCACCATTGGCAGCAACGTGGAGGAGATCATTCTGCCGAAGACCCACTTCTTCATGTGGGACATAGTGAGACCTGAGGCTCTGAGCTTTATCTGGAACACATACTACTCCAACACTGAG
Seq A exon
TTTATCATCCTTGTGATTGACAG
Seq C2 exon
CACGGACCGGGATCGGCTGCTGACCACTCGGGAGGAGCTATATAAAATGCTGGCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748-12-9,12-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(29.2=100),PF0002516=Arf=FE(27.8=100)
A:
NA
C2:
PF128032=G-7-MTase=FE(16.1=100),PF0002516=Arf=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATAGTGAGACCTGAGGCT
R:
TATAGCTCCTCCCGAGTGGTC
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains