MmuALTA0002024-3/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038352 | Arl5c
Description
ADP-ribosylation factor-like 5C [Source:MGI Symbol;Acc:MGI:3028577]
Coordinates
chr11:97993425-97994485:-
Coord C1 exon
chr11:97994338-97994485
Coord A exon
chr11:97993486-97993508
Coord C2 exon
chr11:97993425-97993485
Length
23 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ATCTCAATCCTGCTGGACAGTTT
3' ss Score
5.27
Exon sequences
Seq C1 exon
CCTGACCAATGAGGTTGTTCACACCTGCTCCACCATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAGGAGGCGCTGCGCTCCACCTGGGACACTTACTACTCTAATGCTGAG
Seq A exon
TTTGTCATCCTTGTGATAGATAG
Seq C2 exon
CACAGACCGGAATCGGCTGCTCACCACCCGGGAGGAGCTGTATAAGATGCTGGCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038352-4-11,4-10,4-9,4-8,4-7,4-6,4-5-3/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(27.8=100)
A:
NA
C2:
PF0002516=Arf=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCATGTGGGACCTAGGG
R:
TTATACAGCTCCTCCCGGGTG
Band lengths:
117-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types