HsaALTA1031656-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7830233-7846670:+
Coord C1 exon
chr19:7830233-7830381
Coord A exon
chr19:7846496-7846581
Coord C2 exon
chr19:7846582-7846670
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CGCATGTCTCTGGCCCCCAGACA
3' ss Score
7.84
Exon sequences
Seq C1 exon
GGCAGCGGCGGAGCCGGCGGCGGCCGCGGTCCCGGGGGGCGGCTGAGGGGGCCGGGCCGGGGCTGCGGGGCGAACGGCGCGGCTAGGATCCGGCGGCTCAGCCCGGGGCGGCGAGGCTCGGCACGGAGATGGCGGCGCGCTCGGCGCAG
Seq A exon
ACAGAGCTGTGAACCAACCCCGCTCACGGCTAACAAGCCCACCCACCATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAG
Seq C2 exon
GAGGCCCTGTCGGCCCCCACCTGCTCCCCAACCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTCGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-1-3,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGCGCGGCTAGGAT
R:
CTTGGCCAGCAGCTCCAG
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains