RnoALTA0014313-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2610766-2626310:-
Coord C1 exon
chr12:2626121-2626310
Coord A exon
chr12:2610945-2610948
Coord C2 exon
chr12:2610766-2610944
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TATGTATCTCCCACCACCAGATA
3' ss Score
7.9
Exon sequences
Seq C1 exon
CCTGTCAGCGGGTGAAATGGCAGTGGCGGAGCCGGCGACGGCCGCGGTCCCCGGGGGTGGCTGATTGAAAGGGGCCGGGCCGCGGGGTTTGCGGGACCCCCGAGCAGACGCGACCGCGGGTAGGGGCATCGGACGACGCAGCGCAGGGACAGCGAGGCGAGGCGCGGCGATGGCGGCGCTCTCGGCGCAG
Seq A exon
ATAG
Seq C2 exon
AGTTGTAACCTGGTATCTCCCTGGCTGATGAGCCTGTCCACCATGGCAAGCCCCACTCTGAGCCCCGACTCCTCATCTCAGGAGGCCCTGTCAGCACCCACCTGCTCCCCAACCTCTGACTCCGAGAACCTCAGCCCAGATGAGCTAGAACTACTGGCCAAGCTTGAGGAGCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.784
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGGGCATCGGACGAC
R:
ATCAGCCAGGGAGATACCAGG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]