MmuALTA0006636-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4166567-4183670:+
Coord C1 exon
chr8:4166567-4166763
Coord A exon
chr8:4183488-4183491
Coord C2 exon
chr8:4183492-4183670
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AACGATATGTATCTCCCTAGACA
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGCGGCTCCTGTCAGCGGGTGAAATGGCAGTGGCGGAGCCAGCGACGGCCGCGGTCCCCGGGGGTGGCTGATTGAAAGGGGCCGGGCCGCGGGGTTTGCGGGACCCTCGAGCAGACGTGACCGTGGGTCGGGGCATCGGACGACACAGCGCAGGGACAGCGAGGCTCGGCGCGGCGATGGAGGCGCTCTCGGCGCAG
Seq A exon
ACAG
Seq C2 exon
AGCTGTAACCTGGCATCCCCCTGGCTGATGAGCCTGCCCACCATGGCAAGCCCCACTCTGAGCCCGGACTCCTCATCTCAAGAGGCCCTGTCAGCACCCACCTGCTCCCCAACCTCTGACTCCGAGAATCTCAGCCCAGATGAGCTAGAACTACTGGCCAAGCTCGAGGAGCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-0-7,0-6,0-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.784
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGAGGCGCTCTCGG
R:
TCTTGAGATGAGGAGTCCGGG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types