HsaALTA1034313-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000148335 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr9:129632650-129634149:+
Coord C1 exon
chr9:129632650-129632801
Coord A exon
NA
Coord C2 exon
chr9:129634058-129634149
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGG
5' ss Score
5.84
3' ss Seq
TGCCTCTGCTTTTCAGGAAGGCC
3' ss Score
-1.04
Exon sequences
Seq C1 exon
GAGAGTCGCGGTTGCTGATCGTGGTGCTTGAGTAGAGCCGTGGTTGGTGACAGCATGACGAGCGAGGTGATAGAAGACGAGAAGCAATTCTATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGGGGG
Seq A exon
NA
Seq C2 exon
GCCCGAACAAGACAGGAACGTCCTGTGCCCTGGACTGTGGAGCTGGCATTGGGAGGATCACCAAGCGGCTGCTCCTGCCGCTGTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335-10-14,10-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(27.8=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACAAATCCCACCCACG
R:
CTTGGTGATCCTCCCAATGCC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains