RnoALTA0027149-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9655836-9656782:+
Coord C1 exon
chr3:9655836-9656039
Coord A exon
chr3:9656619-9656706
Coord C2 exon
chr3:9656707-9656782
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
CGTCCCTGTGTTTTAGGAAGGCC
3' ss Score
0.05
Exon sequences
Seq C1 exon
GGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq A exon
GCCCAAACAAGACGGGGACTTCCTGTGCCCTGGACTGTGGTGCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAG
Seq C2 exon
GGTGGTTGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809-19-13,19-12,19-11-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGACCTACTGGAAGCAG
R:
CAGGTAGGTCTTGGCTTTGGC
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]