MmuALTA1016027-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026857 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30819629-30820521:+
Coord C1 exon
chr2:30819629-30819832
Coord A exon
NA
Coord C2 exon
chr2:30820453-30820521
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
TGCCCCTGTGTTTTAGGAAGGCC
3' ss Score
-0.12
Exon sequences
Seq C1 exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq A exon
NA
Seq C2 exon
GCCCAAACAAGACAGGGACTTCCTGTGCCTTGGACTGTGGCGCTGGTATTGGAAGGATCACCAAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857-13-16,13-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(56.8=96.9),PF044449=Dioxygenase_N=WD(100=66.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTATGGCCACATCTCCAAC
R:
CAGTCCAAGGCACAGGAAGTC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types