HsaALTA1036239-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159977284-159979914:-
Coord C1 exon
chr2:159979830-159979914
Coord A exon
chr2:159977398-159977416
Coord C2 exon
chr2:159977284-159977397
Length
19 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATGAACTTCATCTGCTGCAGGTT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GACAGAAGAAAGGCAGTTCTGGATTGGATTTAATAAAAGAAACCCACTGAATGCCGGCTCATGGGAGTGGTCTGATAGAACTCCT
Seq A exon
GTTGTCTCTTCGTTTTTAG
Seq C2 exon
ACAACACTTATTTTGGAGAAGATGCAAGAAACTGTGCTGTTTATAAGGCAAACAAAACATTGCTGCCCTTACACTGTGGTTCCAAACGTGAATGGATATGCAAAATCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-32-32,32-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCATGGGAGTGGTCTGAT
R:
CCACAGTGTAAGGGCAGCAAT
Band lengths:
109-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains