MmuALTA1037601-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60448834-60452486:-
Coord C1 exon
chr2:60452402-60452486
Coord A exon
chr2:60448948-60448966
Coord C2 exon
chr2:60448834-60448947
Length
19 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATGAACTTCGTCTGCCGCAGGTT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GACACAGGAAAGGCAGTTCTGGATTGGATTTAATAGAAGGAACCCACTGAATGCTGGTTCTTGGGCGTGGTCTGACGGGTCACCT
Seq A exon
GTTGTCTCTTCATTTTTAG
Seq C2 exon
ACAATGCTTATTTTGAAGAAGATGCAAAAAATTGTGCTGTGTATAAGGCAAACAAAACATTGTTGCCCTCGAACTGTGCCTCCAAACACGAGTGGATATGCAGAATTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAATGCTGGTTCTTGGGC
R:
ACAGTTCGAGGGCAACAATGT
Band lengths:
117-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types