HsaALTA1037885-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137608966-137609609:-
Coord C1 exon
chr7:137609535-137609609
Coord A exon
chr7:137609062-137609064
Coord C2 exon
chr7:137608966-137609061
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTGCTGATTGCTTCTTTCAGCAG
3' ss Score
5.85
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCTTCAAATCGGAAGAAGAAGAGAACAAGCTTTAAAAGAAAAGCCAGTAAAAGAGGGATGGAA
Seq A exon
CAG
Seq C2 exon
GAAAACAAAGGTCGTCCTTTTGTGATAAAACCCATCTCTTCTCCTCTCATGAAACCCTTGCTTGTATTTGTGAATCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-41-30,41-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGGCTTCAAATCGGA
R:
GGGTTTTATCACAAAAGGACGACC
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains