RnoALTA0011788-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64586794-64587488:-
Coord C1 exon
chr4:64587414-64587488
Coord A exon
chr4:64586890-64586892
Coord C2 exon
chr4:64586794-64586889
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGCTGCCTGCCTCCTCCAGCAG
3' ss Score
7.14
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAAAGAACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACCGAG
Seq A exon
CAG
Seq C2 exon
GAAAACAAAGGTCGTCCTTTTGTGATCAAGCCCATCTCCTCTCCTCTCATGAAGCCTTTGCTTGTCTTTGTGAACCCAAAGAGTGGGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-21-16,21-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCCTGAAGGCTTCCAAC
R:
GGGCTTGATCACAAAAGGACGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]