MmuALTA0005390-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37007362-37008028:-
Coord C1 exon
chr6:37007954-37008028
Coord A exon
chr6:37007458-37007460
Coord C2 exon
chr6:37007362-37007457
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCTGCCTGTGCCTCTTCCAGCAG
3' ss Score
7.81
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAGAGGACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACTGAG
Seq A exon
CAG
Seq C2 exon
GAAACCAAAGGCCGTCCTTTTGTGATCAAGCCCATCTCCTCCCCTCTCATGAAGCCTTTGCTTGTCTTTGTGAACCCAAAGAGTGGGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-13-14,13-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCCTGAAGGCTTCCAAC
R:
GCTTGATCACAAAAGGACGGC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: