HsaALTA1039441-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50006434-50016719:-
Coord C1 exon
chr12:50016631-50016719
Coord A exon
chr12:50006626-50006636
Coord C2 exon
chr12:50006434-50006625
Length
11 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
AAGATTCCCCCTTTCCTCAGAAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC
Seq A exon
AATTTATCCAG
Seq C2 exon
TTGGCGAAGGACTTTGAGGATTTCCGTAAAAAGTGGCAGAGGACTGACCATGAGCTGGGGAAATACAAGGATCTTTTGATGAAAGCAGAGACTGAGCGAAGTGCTCTGGATGTTAAGCTGAAGCATGCACGTAATCAGGTGGATGTAGAGATCAAACGGAGACAGAGAGCTGAGGCTGACTGCGAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-11-35,11-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF111803=DUF2968=PU(23.4=89.7),PF078886=CALCOCO1=PU(16.0=69.0),PF140731=Cep57_CLD=PU(15.3=65.5)
A:
NA
C2:
PF111803=DUF2968=FE(60.4=100),PF078886=CALCOCO1=FE(53.6=100),PF140731=Cep57_CLD=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSP00000404190, ENSP00000404808, ENSP00000447177, ENSP00000447393, ENSP00000448136, ENSP00000448697, ENSP00000448707, ENSP00000448860, ENSP00000448968, ENSP00000449170, ENSP00000449186, ENSP00000449370, ENSP00000449374, ENSP00000449620, ENSP00000449669, ENSP00000449959, ENSP00000449963, ENSP00000450064
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTGGAGATTCTCAGTGA
R:
CCAGCTCATGGTCAGTCCTCT
Band lengths:
93-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains