MmuALTA0014749-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99639799-99642971:-
Coord C1 exon
chr15:99642883-99642971
Coord A exon
chr15:99639806-99639819
Coord C2 exon
chr15:99639799-99639805
Length
14 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
AAGTTTTTACCTGTCCTCAGTTG
3' ss Score
6.35
Exon sequences
Seq C1 exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
Seq A exon
TTGAATTCATCCAG
Seq C2 exon
GTTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-31-9,31-7,31-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(15.3=62.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types