HsaALTA1042280-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000165695 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr9:132875115-132878777:-
Coord C1 exon
chr9:132878172-132878777
Coord A exon
chr9:132875200-132875235
Coord C2 exon
chr9:132875115-132875199
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
GTGACCAGGTGCCCTTGCAGGTA
3' ss Score
5.05
Exon sequences
Seq C1 exon
TTCCCGCGTCTGTTTTAAAGATGGGTAAACTGAGGCACAGGGAGCCGGGCCGGGGAGCACTGACAGAACCAGAAGCAGGTTCTGCCTCCCGTCCCCTCGGAGGGCCGACTTGCCCCTTCTGGGTTTCGTCGGGGGTCTCAGATACGAGGAGGCCCAGCTGGAAGCCACCTGAGGGTGTCCCCCGCTAAGATGCGCAAATGGGAAAAGCGAGGCCGGGGTTGGGGAAAGAACTTGCCCGAGCCGCAGAGCGCGTCAGCCGGGGAGGTCGGGGCGGGGGCGACCCGCGCGACCGAGGATCGGGTATCTGGGCCCGGCGCGGAGCCTGCAGGGCGGGGCCGCGGCGCGTGCTGATGACGCAGTCGGCGCGGCGGCCCTAGCGACGCGGTTACTAGGGAGCGGCGAGCCGAGACGGCTACATGGACGCCACTATCGCCCCGCACCGTATCCCCCCCGAGATGCCCCAGTACGGGGAGGAGAACCACATCTTCGAGTTGATGCAG
Seq A exon
GTATTAACCACCTGGGTGTCTGCCCTGCACCCACAG
Seq C2 exon
AACATGCTGGAGCAACTCCTGATCCACCAGCCCGAAGATCCCATCCCCTTCATGATCCAGCACTTGCATAGAGACAACGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATGGACGCCACTATCGC
R:
CTGGTGGATCAGGAGTTGCTC
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains