HsaINT1003311 @ hg38
Intron Retention
Gene
ENSG00000165695 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr9:132875115-132878777:-
Coord C1 exon
chr9:132878172-132878777
Coord A exon
chr9:132875200-132878171
Coord C2 exon
chr9:132875115-132875199
Length
2972 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TGTCTGCCCTGCACCCACAGAAC
3' ss Score
9.86
Exon sequences
Seq C1 exon
CGGGGCTCGACTCTAGGAGTTGGGCTGAGGATTTCCACCCGATCCTCGAACCTCCGGCCCATCTCATGGACGCCCCTCCCCCTTCAAACACCCTCCCCCACATTTATTCCCGCGTCTGTTTTAAAGATGGGTAAACTGAGGCACAGGGAGCCGGGCCGGGGAGCACTGACAGAACCAGAAGCAGGTTCTGCCTCCCGTCCCCTCGGAGGGCCGACTTGCCCCTTCTGGGTTTCGTCGGGGGTCTCAGATACGAGGAGGCCCAGCTGGAAGCCACCTGAGGGTGTCCCCCGCTAAGATGCGCAAATGGGAAAAGCGAGGCCGGGGTTGGGGAAAGAACTTGCCCGAGCCGCAGAGCGCGTCAGCCGGGGAGGTCGGGGCGGGGGCGACCCGCGCGACCGAGGATCGGGTATCTGGGCCCGGCGCGGAGCCTGCAGGGCGGGGCCGCGGCGCGTGCTGATGACGCAGTCGGCGCGGCGGCCCTAGCGACGCGGTTACTAGGGAGCGGCGAGCCGAGACGGCTACATGGACGCCACTATCGCCCCGCACCGTATCCCCCCCGAGATGCCCCAGTACGGGGAGGAGAACCACATCTTCGAGTTGATGCAG
Seq A exon
GTGACCGGACACCCCTGCCCGTCGCGACGCTGGCGGCGGCTCGGGAGCCTCCACTGCGACGTCGGGTGCGCGGCCGGGACCCGCAGCTGGGGCCGAGTCGCGCGCCCACGAAGCAGCCCAACTCGGGATGTACGATTCGTGTGTCGCCGTGACCCCGAGGGGGCCCTCGAGCTGGGGACGCTCCTGGTCCTGCCCGGGTTTGCCTCAGGCGGACCCAGGGGGAGGAAGGGGGCCACTCGAGCCGGGATTTGGTCCTGGCTGTGCCGCCAGCGGGCCTTATGGTCTGGAACCAGTCCTTTCCTTTTCTCGGTTTCCCCACCTGTGAAATGCCAGGTTGCAAGAGGTGGTCTCCCAGGGGCTCTCCCGGCGCTGACAATTACCATCTGTCGAATTTGTGGGGAGCCTCTCGGCCCAGGTTTCTGAGGTGGGCATTGTCCGAGTTCAAGCTGGCATCTCCATCCTCAGAGAGGGCCGCCTCTGGGACAGCAGCATCTCCCACCTTGGTCCCTCCTCCTCAGGGCCAGACGTCCCCGGCAGCTCCGAAGCTCTCATTCTGGCTCCAGGCCTGACTGGGCCCCCAGCTCACCGTGTGACTTTGGGCGAGGCCCCGTCCCCGCCAGGGCCCCAGTTTTCCCTTTTGCACGTGGTGGAGGTCAAGGCTTTCAGGAGCTGGAGGGGAAGAACTCTCAGCCACTCAAAGGTTCTGAGAGGCAAGGGGAAGCTGGAGCTCAGTTTTCAGATCATTTGTCTGCTTCCCAGGGTACACCCCATCCCCAGGGGCATGGCATGGAGGGCATAGTGGTGTCTGTGGTCATTTGAGGTTCTGCCCTGCACACTAGACAGCTGAGCCCAGACGAAGAAACCCGTGTCTGCACCTCCATCAAACACATTTCCCTCGGAAAGTGTTAACTGATAGAGGGAGAGCAAGAGATTCCTAAAACTGCTTGAGTGGCCAATCACAAATCAAATAGCTAGCTGGGTTAGAAGTCAGCAGGTCAGGGCAGGATGGGGGATCATCTGGAGCCCTGTTGTCTGCTCTAGAGAACCTGGTGTGTTTTCCACATTGATTGTTGGAGGAATTGCCCAGGAAAGCTTTTATTGATTTTGAAACAGGGTCTTGCACTGCTGCCCAGGCTGGAGTGCAGTGATACAATCATGGCTTACTGCAGCCTTGAACTCCTGGGCTCAAGCAATCCTTCTGCCTTAGTCCCTCCAGAGTAGCCGAGACTACAGGTGCAGGCCACCATACCTGGCTAATGTTTTTTTTTTAATTTTAGTACAGACGAGGTCTTGCTATGTTGCCCGGACTGGTCTTGAACTCCTGGGCTCAAACAGTCCTTCTGCCTCGGCCTCCCAACAAGAAAGCTTTCAGTCCAGTATTTCCAGTCCTTAGTCATCTGTGGATTCCCTCCATGTTTTTGACCATTTCCATTTTTTATACTTTTGATTTTAAAATAATGTTAGATTCACAGGAAGTTAAAAAATAGTATGGATTTCTGGTCTCCCCTCCCACATTGCCCCCGTGATAACATCTAACATAACTGTAGCACATTGTCAAAACCAGGAAACTGGCATTGGTACAATAGGATTACCTGAACTGTAGGCCTTGTTTGGATTTCCTCCATTTTTACCTGCATTGATGTTTTTGTTGTGCATACAGTTCTGTGCAGTTGTATCACATGTACAGATTTGCATAACCGCTACTGCACCTCCATTTAAACTAATCACTTGTTTAAATCAACTCACCTTTTAAAAAATTAAATAGCCGCTTTTGCCTCATCCTAAGTGATATCCTTGAAATTATTGATTTGATGTACTTATATTTCTAATACACGTTAAATACACAATGATTTAAACATGAAATGTAAAATATTTATGTGTGAACCATCTAAAATCATCTCATTCCATCATCGCACCAGTGACATACAAACATGAATTCACTCCAGCTGTGCTACTGAACAGGCAGAGAAGCTGAGGCCCAGAGAAGGGAAGGGACTTGCTGATGAGATACAGTGGGGCTGGAACCAAGACTTCTCATGGCTCGGTGCTCTTTCCCTGCCCCACACTCCCTTCACTCCAAGAGGGCTACAGCCCCTCCCTCCTTGTCCCTGGGGCTCAAGGATACCCCTTATTGCAGCAGCACAGCTGCTATGAGCTCCTCCTCATTTCTCTGCCTAGGGTTCTGCAACCCCAGAAGCTGCTTTCTCTTGATATGCTTGCCTGATTGGATGAAATGGCCAGAATATCCCAGGACTATTTAGAAATCTGGCTGGTAACATTCTGTTCCATTCTGGAGAGACACAGTTAGTGGTGACGGTCATGTTCCCCAGCAAACATCTGCGCTGGGCATCTGCTATGACTGCCAGGTATTGGGGTGCCAAGGGCTCTAGGCAGACAAGGAGGCCCACAGAACCCATGGCCTGCCGGGGGGATGGTGGCCTGGTGAGTAGGGACAGGGTGAGGCGTGGAACAGGGCGATGCCCGCAGGCAGGTGCAGGAGCATCTGACATATTTACGTAGTGCACATACTCAGGAAGGTATGTTCCCATTGAGATCTGAGACTGAGCAGAAGTTAGCCAGGATGAGGACAAGGCAGAAGCTTCCAAGCTGAGGGAACAGCATCTGCTAAGGCTCTGAGGGGAATGGTGATGCTTGAGAACTTGGAGAAGGCTGGTCTGGGAAGCTCAAAGGGCCCCAGGGGAGAGAGCCCTGGACTGCCTGCTCTGAATCAGGGGCGAGACTCCTCCACTTCTGCCTCCCCATAGGTGCCTCCGCAGCAGCACCACGTGGCCCCCCTCATGCCTCTGCTCATGGGGACCCAAGCAGATGCCAGCTGGGGCGGTGGCTGGGTCCCAGGTTGAAGGCATGTTTGGTGGGGTGCAGTGGAGAGAGCAGGCCCCATAGCTGGTATCTGTGGTGACCAGGTGCCCTTGCAGGTATTAACCACCTGGGTGTCTGCCCTGCACCCACAG
Seq C2 exon
AACATGCTGGAGCAACTCCTGATCCACCAGCCCGAAGATCCCATCCCCTTCATGATCCAGCACTTGCATAGAGACAACGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695:ENST00000298545:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains