RnoINT0015708 @ rn6
Intron Retention
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7279340-7282097:+
Coord C1 exon
chr3:7279340-7279528
Coord A exon
chr3:7279529-7282012
Coord C2 exon
chr3:7282013-7282097
Length
2484 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
AAATTTGTTTGGGCCCACAGAGC
3' ss Score
6.44
Exon sequences
Seq C1 exon
ATGGAACCCGGGACCAGGACTCGCCACAGCAGAGGCGCTCACCGATGACGCATAGATTGGCGTCCTAGCAACGCCGTTACTAAGGAGCGGCTCGTTGTCCGAAACATGGATGCTACCTCGGCCCCGCACCGCATCCCCCCAGAAATGCCTCAGTACGGGGAAGACTACCACATCTTCGAGATGATGCAG
Seq A exon
GTGACCAGGCACCTGAGGATAGATAGGGTGTACAGCTACCGGGCCGGGCCGGCAGAACAGTCTAGGGGAATCCATTTCTTCAGTTTCCCTACCTGTGAAATCCCGCAGTAGTCTCCAGGGCCTCCTCTAGAATTGTGTGGGAAACCACCTCAGCAGGTTCCCGAGGCCTGAGTCTTAACTGAGATGGGCCCTCGAAGCCCTAACAAGCTAGGTTCACCCACCTCACCCTAAGATCAGTTAAAGAGATAAGTAACGGTTAAAAAAAATCAGAGCAAGATTTATTCCTTGTGTCCACAACAGGAGGAGGAACACACACAAGAAGTCCGGTGATCTGCCCCCCGGGTGTAGTTTTGGGGTCCGGAATGAGGATTATGAGGTGCATAACTAAGCAAGCCTTGTTAAGTGTGGTCCCACACATCACTGACCCATATTTGTCTCCGCTCCACTCCCTCCTGCAAAGTGGTCTGACCAGTTGTAGGAACTCTGTGGAGTGTCTTCCCTGGAGACCAGCTCCTTCTCCTGGAGTCCTGGGTAATTCCAGTTCGCAGGAACCATGGCCTCAGCTGTCAGCCAAAGGGACACATGTTTTGTCTCACGGGGGTGTCTTTGACCCTGTTAGGACAAGTAGACGACTGTTTAAATTTTAGATGGCATTCCTTTTCCAGGTGGTCCCCCAAAGGGCAGCAGTATTTTCTACATAGCCTCCATCCTCAGAACTGAGCTTTTGAAAGCCCTCCTCTCTCATCCCTTATTGTATCTCCTACCCTGTCCTGGTTCCCAGCCAACTGTGGCCTTTGGCCAAACCAGATCCCCTCCTAGGTGTGATCCAGCTTTCGACTTGTGCTCTCCAGAGGTGAAAATGTCTTGTAGGGGCTAGACAGATGCGCTCTTTACCACTCGATGGTTCTGAGAGCCACAGGTATGTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGGCCATAGGTATTTTTAGATTTTACACACACACACACACACACACACACACACACAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAATCTGGAGTCACAAGAAGAGAGATTCATGATTCTGGTCTGTTTTCTAGTTCAGTCGGTGGGGCAATAACCAAGAATACTTTATCTTATTATCACTTTATTTTCAAATAATCTTAGGCTTGGGAAGTTATAAAAATTGTGTTGATCTCTTGTCTCTTGTCTACCCTTGGGTCATGTAGCCTGGGCCTTCTCAAAGCCAGGAGGCAGAAGTGGGTCCAGTACCTGAGCCCGCACTGCAGGCTCCTCTTGGATCTCCTCCCCTTTCACCTGCTCTCGGGTTTCTGTGTGCAGCTCTATGAAATTTTATCAGATGTCTGTGGTTTATGGGAGTCACAGATCCACTGCTGTTTATCCATCTTAACACTGTCCTCAGAGTTCAGTTCACTGTCGCAGACTCGGATGCTTTTTGTCTTGTCCTGAGAAATACTCTTGGCCTTACCAAAGTCTGGAGCGTGCAGATGTGATATCTGTGGAGCCTCTTAGTCAAGAAGTGAACACCAGAGCGTCTAAGCACAGAGTTAGCCCAGCTGTGCCACTGAACGAAGGGTAGGGGGCTGTGGAAAGAGAGCTGAATCCCCGAGAAGGGAAGGGACTTGCTGATGAGATCTAGAGTCTGAACAGGACTCCCCATTGGTGCTATTGACTACTGTGCACCTCTAGGCCTCTTCCTACCTCCCCTGCAGCCACACTCCTGTCAGCTTTCCCGTTCTCTGGTGTGCCACTCTGAAAATTGCTTCCTCTGATGTGTTTTGTTTGCTCAGTTGGGTTAAATGGCCAGAATAGCCAGGACTATTTAAATATTTGGCTGATAAGTATTCTGTCCCACTGTGGAAAGACTCAGCCACTAGTAATGGCTTCATTTCCCAACTAACATCTGCACTGGGCACCTCCTGTAATTGTGCAGACAGGGAGGACCACAGAACCCATGGAGTGGTTGAGCAGGAATAAGATGAGGCAGAGAACACAGGTGTACACATGCAGGCCTGTGCAGGAGCAGAGGGCATCGGGGGTTTACCTGGTGCACTGAGATCTGATGACCAAGAAGCCAGGTCAAGGAGCGAGAGGCCCTCTAGGCAGAAGGCCAGCATTCACTGAGGTGCTGCAACAGGACAGCCATGCTGAACCACAGGAAGGCTGTGTGGGAAACACGAAGGAAGAAGAGGTGGGGGACCTGGCTGCTTGAGCTTCCTCAGGCCCCTGACACCAGCAGATGTCCCAACAGGTGGTCCCCATGGCAACCAGGGGCCCTGCAGGTGTTAATCCCTTGAAATTTGTTTGGGCCCACAG
Seq C2 exon
AGCATGCTGGAGCAGCTCCTGATTCACCAGCCAGAGGACCCCATCAGCTTCATGATCAGTCACCTTCGCAGGAACAACGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761:ENSRNOT00000017029:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]