GgaINT1005937 @ galGal4
Intron Retention
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6713451-6714877:-
Coord C1 exon
chr17:6714781-6714877
Coord A exon
chr17:6713536-6714780
Coord C2 exon
chr17:6713451-6713535
Length
1245 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TTTGTCCTGTTGTTTTTCAGAAC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGGTTGCTAAGGGCCGCCATGGACGCCCCCGCCCGGCCGTGGCCGCCGTCGGTGTGCGGCTACGCGGAGCAACGGGGGGTCTTCCGGCTCCTGCAG
Seq A exon
GTGAACGGGGGCGGGGAGGGGCAGCCCGGCATCGCCCCGCCCGGGGGGCCCGGCTTTCCTCGCGGCCTCCCGCGTCACGGGGAGAGTGGGCACGTATACCTACACTGCCCGCCTTAAATTGAACCCAGACGAGCAGAAGGGAATAAAATGGAGGGGAGGCACGTGAGGGCTGGCAAGACAGAGAGAGAGGATCCATCGCTGTCGGCCTGAACAAGTTTAATAAAGCTGGCTTTTCTCGCTTTGCTCTTTACAAAGCGGGCAGTGACCACAGTGCCCATCCCGGGGGTCGTAGTTCGAATAAATGCCTCACAGTGACGGCTGTGGGCTGAACTTGCAGGAAGAACCCGAGCTTTGTGCTGCGCTGTCTGCGGCTGGATAGAAGAGTTGGATAGAAAGGCGTTACGGCTGGCTTTTAGTAAAGGGCGCCCCGCTCTGTTGGTGAGCAGCTCAGGAGGGGGTAACGAACTCAGCGCATTCGCTGCTGTTTGAGGTTTCCTTTTAATTACGGAATTCCCAGCTGTGCCGAAGCTCCTGATGAGGAGATGGGCGGAGTCGGTGTTGGCCCATAGGGCTGCAGTCGGAGCGGGGAGCAGTGCTGCCGGAGGGGTTTCACCTCAGCTCCCCCCGCAGCCCCCGTTGTGCAATAAGAGAACGGCACCCAGAATCAGAATTCAGAAAAAAAGGCTTTAAACTCTTTTTTTTCCCCGCTCGTTTTCTGGCAGCAGGGAGAGCAGCGGGGTTAAGGCAGCGAAATGTGCTGCTTTTGTGGCTTCAGTTGGTTGGATTGGGGCAGCTGTGTGTGTTTCCTCTGGGTCCGATCTATCCCGTTGCCCCCAAGGCTTGCTGGGCACTTGTGGGAATGTGCCAGAGGTTTAACTTGTCCCAGAGAGACAGTGAGGTGGCTGGTTTGGTGCTGTCTGTGTGGGCTGATATCAGTGCTGGCACAGCCGTTACACCACCAGGGCCAAACCCTTCGGGTCTCTGTGTGTATCATAAATAAGCGAAAGCAAACTGCTGTAGGGTTTTCATTTCGTTCATTTATGTATTTGCAGGGTTGAGGAGGGCTTTGTAAAACCGTATTTCACTTTTCCAGCCTCTAAAATAGGGTTTATATTCCGTGCTTTGTCTGTTGAAGGAGACCTAAGAAGTGGAGTTAATAAGGTCCTCATCACCACCTTGCTGTAATGTTATATCAGGACTGAGAGCCCTTTAATTTTCCTCTGAGTTTGTCCTGTTGTTTTTCAG
Seq C2 exon
AACATGCTTGAGGAGCTGTTAATTCATAAGCCTGAGGACCCCATTGAGTTTATGATAGAGCATTTAAAGCAGTACAACGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404:ENSGALT00000021862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTGCTAAGGGCCGC
R:
CATCGTCGTTGTACTGCTTTAA
Band lengths:
182-1427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]