MmuINT0000405 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:28555681-28558293:+
Coord C1 exon
chr2:28555681-28555794
Coord A exon
chr2:28555795-28558208
Coord C2 exon
chr2:28558209-28558293
Length
2414 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATC
5' ss Score
4.28
3' ss Seq
ATATCTGTTTGTGCCCACAGAAC
3' ss Score
10.8
Exon sequences
Seq C1 exon
GTTACTAAGGAGCGGAGCGCTGTCGGAAACATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTTTCGAGATGATGCAG
Seq A exon
GTGATCAGGCGCCCGAGGATAGGGAATACGGCTACCGGGCCGGGCCGGCAGCATGGTCTGGGGGGAAATCCCTTTCCTCAGTTTCCCCACCTGTGAAATGGCGCAGTAGTCTCCAGGGCCTCTTCTGGCATTGTATGGGAAACCTCAGCCGGTTCCTGAGCCCTGAGTCTTACCTAAGCTGGGCCTTGGAAGCCCTAACAAGCTAGGCTCACCCACCTCACTCCAAGACCAGTTAAAGAGATAAGCAACAGAAAAAAAGAAAAAGTCAGAGAAAGGCTTATTTCCTGTGACCACAATGGAAGGAGGAACACGTTCAAGAAGTTCAGTGACCTGCTTCCCGGGGCTAGTTTTGGGGTCCACACAAGTCTAGTGTGATCCCGCACCTCACTGACCCATATCTGTCTCCGTTCCACTCCCTCCTGCAAGGTGGTCTGACAAGTTGGAGGAAAACTTCCCAGGAGACCCGCCCCTCTGGCTGGTGCCAGCCTTTTCCTTCTCCTGGCATGAGGTTCCTGGGAAATTCCAGTTCCCAGGACCAAACCGATTGTCTCAGCCGTCAGGCAAAAGACACATGTGTTTTGTCTCATGAGGGTGTCTTTGACCCTGTTAGGACAAGTAGGGGACCGTATAAGTTTTAGATGGCATCCCTATCCAGGTGGTCTCCTCTGGGGCAGCATATTTTCTACATAGCCTCTATCCTCAGAATTGGCCTTTTGAAAGCCCTCGTCCCTCATCCCTTATACTAGCTCCCAGCTTGTCCTGGTTCCCAGGCAACTGTGGCCTTCAGCCAAACCATATCCCCATCTATGTGTGCTCCAGTTTTTGACTTGTGCTCTCCAGAGGTGAAAGTGACTTTTAGGGGCTGGACCGATGAGCTGTCTAACAGTCAGTGATTCTGGGGGCCGCAGGCAAACTAGAGCTCAGTTTCTAGTACCCTATACTGCAAGCCTAGCATGCACACGCGCACACGTGCGCACACACACACACACACACACACACACAGACAGAGAGAGAGAGAGAAGGAGGGGGACACCGTGCTGGCACATGAGCCCAGGCCAAGGAGCCTGAGTCTACTGAGCAAGCTCCTTTGGAAAGTGTTAATGGAGGGGAGACCAAGGAGTGGCCAGCCACAAATAAAACAGCAAATCTGGGGGCACGAGAGGGGTGATATATGATCCTGGCCTGCTTTCTTGTTGGATTGGTGGGGCGATAACCAGAATACTTTATCTTATTATCATTTATTTTCAAATAATCTTAGACTTGGGAAGTTATAAAAATGGCGTTCACCTCTTGTCTAGCTTAGGCCGTGTAACCTTGGTCTTCTCAAAGCCGTGAAGCAGAAGTGGGTGCAGTGCTTGAGCCTCCACTGCAGGCTTCTCCTGGATCTCACCCCCTTTCACCTGCTCTTGGGTTTCTGTGGTGGTGTGTACAGCTCTGTGACGTTTTATCAGATGTCTGTGGCTCTCATGGGATTCACAGATCCACTGCTGTTCATCCGTGATAACAGACTGTCCTCAGACTTGGCTTCTTTTTGTCTTGTCCTGAGAAGGACTCATGGCCTTATCAGCCCGAAGCATGCAGATGTGTTACCTGTGTAACCTCTTAGTCAAGAAGTGAACACAACATCTCTAAGCACAGAGCCAGCCCAGCTGTGCCACTGAACGAATGGTAGGGGGCTGGGGAAGGAGGGCTGAGGCCCCAAGAAGAGGAGGGACTTTCGGATGAGATCTAGAGTCTAAACAGGACTCCCCATTGGTGCTCTTGACTACTCTGCACCTCATTGTCCTCATTGGCCCTTCCTACCTCTCCTGCAGCCCAGCTGCTGTCAGCTCTCCAGTTCCCTGGTGTGCCACTCTGAAAACTGCTTCCTCTGACGTGTTTGCTCAGTTGGTTAAATGGCCAACATCCAGGACTATTTAACTGCTTGGCTGATAAGTATTCTGTCCCACTTTGGAGAGACTCAGCCACTAGTGAGGGCTTCGTTTCGTGGCTAGCATCTGCACTGGGTACCTACTGTAATTGTGTAGACAGGGAGGACCGCAAAACCCATGGAGTGTCGAGCAGGAATAGGAGAGGCAGGGAACAGAGGTACACATGCAGGCCTGTGCAGGAGCAGAGAGCAGCAGGGGTTTATCTGGTGCACTGAGAGCTGATGATCAAGAAGCCAGGTCAAGGAGCAAGAGGCGTTCTAGGCAGAAGACCAGCATTCACTGAGGCGCTGCAACAGGACAGCTGTGCAGGACCTCGGGAAGACTGTGCGGGAAACACAAAGGGAGATGAGGTGGGGACCTGACTGCTTGGGCTTCCTCAGGCTTCTGCTGCCAGTGACACCAGCAGATGTTCCAACAGGTGGTCCCCATGGCAACCAGGGTCCCTGCAGGTGTTAACCTCTTGATATCTGTTTGTGCCCACAG
Seq C2 exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
-1190002A17Rik:NM_001033874:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: