GgaINT0125947 @ galGal3
Intron Retention
Gene
ENSGALG00000013404 | E1BT67_CHICK
Description
NA
Coordinates
chr17:7347736-7349135:-
Coord C1 exon
chr17:7349058-7349135
Coord A exon
chr17:7347821-7349057
Coord C2 exon
chr17:7347736-7347820
Length
1237 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TTTGTCCTGTTGTTTTTCAGAAC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGGACGCCCCCGCCCGGCCGTGGCCGCCGTCGGTGTGCGGCTACGCGGAGCAACGGGGGGTCTTCCGGCTCCTGCAG
Seq A exon
GTGAACGGGGGCGGGGAGGGGCAGCCCGGCATCGCCCCGCCCGGGGGGCCCGGCTTTCCTCGCGGCCTCCCGCGTCACGGGGAGAGTGGGCACGTATACCTACGCTGCCCGCCTTAAATTGAACCCCGACGAGCAGAAGGGAATAAAATGGAGGGGAGGCACGCGAGGGCTGGCAAGACAGAGAGAGAGGATCCATCGCTGTCGGCCTGAACAAGTTTAATAAAGCTGGCTTTTCTCGCTTTGCTCTTTACAAAGCGGGCAGTGACCACAGTGCCCAACCCGGGGGTCGTAGTTCGAATAAATGCCGCACAGTGACGGCTGTGGGCTGAACTTGCAGGAAGAACCCGAGCTTTGTGCTGCGCTGTCTGCGGCTGGATAGAAGAGTTGGATAGAAAAGCGTTACGGCTGGCTTTTAGTAAAGGGCGCCCTGCTCTGTTGGTGAGCAGCTCAGGAGGGGGTAACGAACTCAGCGCATTCGCTGCTGTTTGAGGTTTCCTTTTAATTACGGAATTCCCAGCTGTGCCGAAGCTCCTGATGAGGAGATGGGCGGAGTCGGTGTTGGCCCATAGGGCTGCAGTCGGAGCGGGGAGCAGTGCTGCCGGAGGGGTTTCACCTCAGCTCCCCCCGCAGCCCCCGTTGTGCAGTAAGAGAACGGCACCCAGAATCAGAATTCAGAAAAAAGGCTTTAAACTCTTTTTTTTCCCCGCTCGTTTTCTGGCAGCAGGGAGAGCAGCGGGGTTAAAACAGCGAAATGTGCTGCTTTTGTGGCTTCGGTTGGTTGGATTGGGGCAGCTGTGTGTGTTTCCTCTGGGTCCGATCTATCCCGTTGCCCTCAAGGCTTGCTGGGCACTTGTGGGAATGTGCCAGAGGTTTAACTTGTCCCAGAGAGACAGTGAGGTGGCTGGTTTGGTGCTGTCTGTGTGGGCTGATATCAGTGCTGGCACAGCCGTTACACCACCAGGGCCAAACCCTTCTGTGTGTATCATAAATAAGCGAAAGCAAATTGCTGTAGGGTTTTCATTTCGTTCATTTATGTATTTGCAGGGTTGAGGAGGGCTTTGTAAAACCGTATTTCACTTTTTCAGCCTCTAAAATAGGGTTTATATTCCGTGCTTTGTCTGTTGAAGGAGACCTAAGGAGTGGAGTTAATAAGGTCCTCATCACCACCTTGCTGTAATGTCATATCAGGACTGAGAGCCCTTTAATTTTCCTCTGAGTTTGTCCTGTTGTTTTTCAG
Seq C2 exon
AACATGCTTGAGGAGTTGTTAATTCATAAGCCTGAGGACCCCATTGAGTTTATGATAGAGCATTTAAAGCAGTACAACGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404:ENSGALT00000021862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219712=RIIa=PU(18.2=23.1)
A:
NA
C2:
PF0219712=RIIa=PD(75.8=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]