HsaINT0025668 @ hg19
Intron Retention
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135750502-135754198:-
Coord C1 exon
chr9:135753559-135754198
Coord A exon
chr9:135750587-135753558
Coord C2 exon
chr9:135750502-135750586
Length
2972 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TGTCTGCCCTGCACCCACAGAAC
3' ss Score
9.86
Exon sequences
Seq C1 exon
CTTGGCCAGAGCCGGGGAGCTGGGAGGGGTCTACCGGGGCTCGACTCTAGGAGTTGGGCTGAGGATTTCCACCCGATCCTCGAACCTCCGGCCCATCTCATGGACGCCCCTCCCCCTTCAAACACCCTCCCCCACATTTATTCCCGCGTCTGTTTTAAAGATGGGTAAACTGAGGCACAGGGAGCCGGGCCGGGGAGCACTGACAGAACCAGAAGCAGGTTCTGCCTCCCGTCCCCTCGGAGGGCCGACTTGCCCCTTCTGGGTTTCGTCGGGGGTCTCAGATACGAGGAGGCCCAGCTGGAAGCCACCTGAGGGTGTCCCCCGCTAAGATGCGCAAATGGGAAAAGCGAGGCCGGGGTTGGGGAAAGAACTTGCCCGAGCCGCAGAGCGCGTCAGCCGGGGAGGTCGGGGCGGGGGCGACCCGCGCGACCGAGGATCGGGTATCTGGGCCCGGCGCGGAGCCTGCAGGGCGGGGCCGCGGCGCGTGCTGATGACGCAGTCGGCGCGGCGGCCCTAGCGACGCGGTTACTAGGGAGCGGCGAGCCGAGACGGCTACATGGACGCCACTATCGCCCCGCACCGTATCCCCCCCGAGATGCCCCAGTACGGGGAGGAGAACCACATCTTCGAGTTGATGCAG
Seq A exon
GTGACCGGACACCCCTGCCCGTCGCGACGCTGGCGGCGGCTCGGGAGCCTCCACTGCGACGTCGGGTGCGCGGCCGGGACCCGCAGCTGGGGCCGAGTCGCGCGCCCACGAAGCAGCCCAACTCGGGATGTACGATTCGTGTGTCGCCGTGACCCCGAGGGGGCCCTCGAGCTGGGGACGCTCCTGGTCCTGCCCGGGTTTGCCTCAGGCGGACCCAGGGGGAGGAAGGGGGCCACTCGAGCCGGGATTTGGTCCTGGCTGTGCCGCCAGCGGGCCTTATGGTCTGGAACCAGTCCTTTCCTTTTCTCGGTTTCCCCACCTGTGAAATGCCAGGTTGCAAGAGGTGGTCTCCCAGGGGCTCTCCCGGCGCTGACAATTACCATCTGTCGAATTTGTGGGGAGCCTCTCGGCCCAGGTTTCTGAGGTGGGCATTGTCCGAGTTCAAGCTGGCATCTCCATCCTCAGAGAGGGCCGCCTCTGGGACAGCAGCATCTCCCACCTTGGTCCCTCCTCCTCAGGGCCAGACGTCCCCGGCAGCTCCGAAGCTCTCATTCTGGCTCCAGGCCTGACTGGGCCCCCAGCTCACCGTGTGACTTTGGGCGAGGCCCCGTCCCCGCCAGGGCCCCAGTTTTCCCTTTTGCACGTGGTGGAGGTCAAGGCTTTCAGGAGCTGGAGGGGAAGAACTCTCAGCCACTCAAAGGTTCTGAGAGGCAAGGGGAAGCTGGAGCTCAGTTTTCAGATCATTTGTCTGCTTCCCAGGGTACACCCCATCCCCAGGGGCATGGCATGGAGGGCATAGTGGTGTCTGTGGTCATTTGAGGTTCTGCCCTGCACACTAGACAGCTGAGCCCAGACGAAGAAACCCGTGTCTGCACCTCCATCAAACACATTTCCCTCGGAAAGTGTTAACTGATAGAGGGAGAGCAAGAGATTCCTAAAACTGCTTGAGTGGCCAATCACAAATCAAATAGCTAGCTGGGTTAGAAGTCAGCAGGTCAGGGCAGGATGGGGGATCATCTGGAGCCCTGTTGTCTGCTCTAGAGAACCTGGTGTGTTTTCCACATTGATTGTTGGAGGAATTGCCCAGGAAAGCTTTTATTGATTTTGAAACAGGGTCTTGCACTGCTGCCCAGGCTGGAGTGCAGTGATACAATCATGGCTTACTGCAGCCTTGAACTCCTGGGCTCAAGCAATCCTTCTGCCTTAGTCCCTCCAGAGTAGCCGAGACTACAGGTGCAGGCCACCATACCTGGCTAATGTTTTTTTTTTAATTTTAGTACAGACGAGGTCTTGCTATGTTGCCCGGACTGGTCTTGAACTCCTGGGCTCAAACAGTCCTTCTGCCTCGGCCTCCCAACAAGAAAGCTTTCAGTCCAGTATTTCCAGTCCTTAGTCATCTGTGGATTCCCTCCATGTTTTTGACCATTTCCATTTTTTATACTTTTGATTTTAAAATAATGTTAGATTCACAGGAAGTTAAAAAATAGTATGGATTTCTGGTCTCCCCTCCCACATTGCCCCCGTGATAACATCTAACATAACTGTAGCACATTGTCAAAACCAGGAAACTGGCATTGGTACAATAGGATTACCTGAACTGTAGGCCTTGTTTGGATTTCCTCCATTTTTACCTGCATTGATGTTTTTGTTGTGCATACAGTTCTGTGCAGTTGTATCACATGTACAGATTTGCATAACCGCTACTGCACCTCCATTTAAACTAATCACTTGTTTAAATCAACTCACCTTTTAAAAAATTAAATAGCCGCTTTTGCCTCATCCTAAGTGATATCCTTGAAATTATTGATTTGATGTACTTATATTTCTAATACACGTTAAATACACAATGATTTAAACATGAAATGTAAAATATTTATGTGTGAACCATCTAAAATCATCTCATTCCATCATCGCACCAGTGACATACAAACATGAATTCACTCCAGCTGTGCTACTGAACAGGCAGAGAAGCTGAGGCCCAGAGAAGGGAAGGGACTTGCTGATGAGATACAGTGGGGCTGGAACCAAGACTTCTCATGGCTCGGTGCTCTTTCCCTGCCCCACACTCCCTTCACTCCAAGAGGGCTACAGCCCCTCCCTCCTTGTCCCTGGGGCTCAAGGATACCCCTTATTGCAGCAGCACAGCTGCTATGAGCTCCTCCTCATTTCTCTGCCTAGGGTTCTGCAACCCCAGAAGCTGCTTTCTCTTGATATGCTTGCCTGATTGGATGAAATGGCCAGAATATCCCAGGACTATTTAGAAATCTGGCTGGTAACATTCTGTTCCATTCTGGAGAGACACAGTTAGTGGTGACGGTCATGTTCCCCAGCAAACATCTGCGCTGGGCATCTGCTATGACTGCCAGGTATTGGGGTGCCAAGGGCTCTAGGCAGACAAGGAGGCCCACAGAACCCATGGCCTGCCGGGGGGATGGTGGCCTGGTGAGTAGGGACAGGGTGAGGCGTGGAACAGGGCGATGCCCGCAGGCAGGTGCAGGAGCATCTGACATATTTACGTAGTGCACATACTCAGGAAGGTATGTTCCCATTGAGATCTGAGACTGAGCAGAAGTTAGCCAGGATGAGGACAAGGCAGAAGCTTCCAAGCTGAGGGAACAGCATCTGCTAAGGCTCTGAGGGGAATGGTGATGCTTGAGAACTTGGAGAAGGCTGGTCTGGGAAGCTCAAAGGGCCCCAGGGGAGAGAGCCCTGGACTGCCTGCTCTGAATCAGGGGCGAGACTCCTCCACTTCTGCCTCCCCATAGGTGCCTCCGCAGCAGCACCACGTGGCCCCCCTCATGCCTCTGCTCATGGGGACCCAAGCAGATGCCAGCTGGGGCGGTGGCTGGGTCCCAGGTTGAAGGCATGTTTGGTGGGGTGCAGTGGAGAGAGCAGGCCCCATAGCTGGTATCTGTGGTGACCAGGTGCCCTTGCAGGTATTAACCACCTGGGTGTCTGCCCTGCACCCACAG
Seq C2 exon
AACATGCTGGAGCAACTCCTGATCCACCAGCCCGAAGATCCCATCCCCTTCATGATCCAGCACTTGCATAGAGACAACGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-C9orf98:NM_152572:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)