BtaINT0016350 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102946045-102949233:-
Coord C1 exon
chr11:102949150-102949233
Coord A exon
chr11:102946130-102949149
Coord C2 exon
chr11:102946045-102946129
Length
3020 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TGTCTGCCCTGTGCCCACAGAAC
3' ss Score
11.55
Exon sequences
Seq C1 exon
ATGGACGCGACCACCGCCCCTCATCGCATTCCCCCGCAAATGCCCCAGTATGGGGAGGCGAACCACATCTTCGAGTTGATGCAG
Seq A exon
GTGACCCGGGCAGCCCTGTCCCATCGCGACACCAGGCGGTGGCCGGGGACCGTCTTGGCGGCGGTCCGGCTGCGCGCTGGCGACCCTACATCTGGGAGGGGTGACGTCTGTTAGCCACGAGGCCGCCCGACTTGGGGTGTCCGACACGACTGTGTCATCGTACCCCCAAGGAACCCCTCGACCGAAAGATGCTCCTTGACCATACTCGGCTGGTCCTGGAGGGAGGAAAAGGGGGCAGGCCCTCCCGGCCGTGACTGGACCCTTGCTCCGACCCAGTCAGGTCGATGATCTGGAAGAGGTTCCTTCCTTTTTCTTAGTTCCCTTGTCTGTGAAACACCAGGTTGCAAGAGGTGGTTTCCAAGGGACTCATCGTGTGCTGACCATTCCCAGGCTGGCTGCGGTCTTGTGTCTGAGCTGGGGAGTGTCTGAGTTGAAGGTGGCCTCTCCATCCTCTGAGAAAGGCCACCTCCTGGGACAGCAGCCGTGTGGTGTGGAAGGCAGTTTTTCCCACCCGGCCCTTTCTCCTCAGAGCCAAGAGTTCAGGGAAGCTTCCAAGCCCTCACCCTGAGTTCCCGACCTGACTGACCCACTGCCTGTGTGACCTGAGGCAAAGCCACTCCCCAGCCTGTTCTCCAGGTTTCCCTTCTGCATCTTGGATTGGTGGTTTAGTCGCTAAGTTGTATCTGACTCTTGCGACCCCATGGACTGTAGCCCGCCAGGGTCCTCTCTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGATTGCCATTTCCTTCTCCAGGGGATCTTCCCCACCGAGGCATCCTGGGGAAGTGAAAGCTTTCAGGAGCTGGACTGGAGGATCTCTCAGCCACTCAGAGGTTCTGAGGGCCAGAGGGAAGCTGGAGCATTTGTCTGCTCCTCCAGGTAGACCCCGATCCCCAGAGGCACCTCCTCAGTGATGCCTGTGGCTGTTTGAGCGTCTGACAGCTCAGAGCAGAGCTCAGAGTAAGAAACCCGCGTCTCTCTCTCTCCTGGACATAGGACATAGGCTTCCTTTGGAAAGCGTTCACTGATAGAGGGCGCACAAGAGATTGCTAAGACCGAGTGGCCTAAGTAGAGGAGATGGCTAGCTGAGTCCTAAGTCCTCAGTGGTGGCAGGCAGTACACGGGCAAGTCCTAGGGGCACCCTGGTCTGCTCTTAGGGAATCTGGTGTCCCTCATAGCAATTGTTGGAAGGAGTAGCCTGAGGAAGCTTTTAGTCCATTGTTTCCAGTCCTTAGTAATTTCTGTGCTCCCCACATGGTTTTTCATCATTTTCATTTTTCAGCATTTTTATTTTGAAATGATTTTGGACCCACCGGAAGTTACACAAGTAGCAAAGAACTCTAGTGTACCCTTCCGCCAGCGTCCCCCGGTAGTAAAATCTGACCTAGGGCAGTGTACCCTTCCGCCAGCTTCCCCCGGTAGTAAAATCTAACCTAAGGGCAGTGTATCCTTCCGCCAGCTTCCCCCGGTACTAAAATCTAACCTAGGGCAGCTCATTGTCAAAACCAGCAAACTGACGGGGGCACAATACTATTAACCAGACTACAGACCTTATTTGAATCTCATCCATTTTTACCAGCACTCTTTTTTTTTTTTTTTTTTCGTATGAATCTACGAAATTTGGGGCTTCCCAGATGGCTTAGTGGTAGAGAATCCACCTGCCAGTGCAGGAGCCACAGGAGATGCAGGTTCAGTCCGTGGGGGGGGAAGATCCTCTGGAGCAGGAAATAGCAACCCACTCCAGTATCCTTGCCTGGAAAATTCCATGGACGGAGGAGCCTGGCGGGCTACAGTCCATGGAGTTGCAAAGACTCGGTTGTGACTGAGTCACTGAGCTTGAGCACACGCACACACCACACAGTGAAATTTTATCACAGGTATAGATTCATGTAACCAACAGCATATTTCCATTTTAACTTCATTTCTTTAAATCAGCCCACTCAAAAAAAATTAACTTATTTTACCTCATCCTAAGGTTTGATGTACTGATTTTTTCTAATACACATTAGATTTACAACTGTGTAAAAGTGAACTTTAGAATATTCATCTGTGAGCTATCTAGAATCATCTCACACGGTCTCACCAGCGCCATAGCACCATGGATCGTGTCCAGCTGTGTCTTAATAGGTGTAGAAGCTGAGGCCCAGAGAGGGGAAGGGACCGGTGGGATGCAGAGCGGGGCTGGGCCTTCTCGCCGTTCAATGCTGTTTCTGCTGTGCTGTTCTCCGTCTGCCCGCAAAGGGCTGCAGCCCCTGCCTGCCTGTCCCTAGGGCAGAAGGCTGCTCCTTCGTGCACTGGCGCTGCTCTCAGCCACCTGGTTCATTTCTGTGCCTTTTGTTCTAGAACCATGGAAGCTGCTTTACTTTAGAATTAAGTGGCCAGACAATCCCAGGACTCTTTAGATACCTGGCTAGTACATACTCTGTCCCACACTGGACAGACACAGGTAGCAGCAATGGCCATGTCACCCGGCACACGTTCTGTGTGGGGCCCCTTCTGTGGTCGTGCTGGGCACTGAGATGTGGGTGAGGCAATAAAGGGGATGCGTAGGGGCTGCAGGAGCGTGCCACAGGATTGACCTAGTGAGCGTCATGGGGAGAAGTGTTTCATGCTGAGGGAGCAGCATCTACAATGGCTCTGAGGGGTGGATGGGTGCCCTGCAGGAGAGGGGTGGAGAGAAGGCTGGTCTGGGGGGGCCACAAAGGAGCTGAGGGGCAAGGGCCCCAGGACTACTTGCTCTGAGTCAAGGGCGCTTCCCTCCAGCTCTGCCTCCTTCCAGGTGCCCCCACCCCCAGCAAAACCCATGTGGCCCTTCCCTCATACCTCTGCTCCCAGGGACCAAGGCAGACACCCACTAGGGTGGGAGGCAGGGAAGAGATCAGGTCCCATAACTGGTATCCATAGTGATGCCAGGTTGCTTGGCCACCAGAGCCTGGGGCCTTGGGTGCTCATGTAGCGTCAACCCCCTGAGTGTCTGCCCTGTGCCCACAG
Seq C2 exon
AACATGCTGGAGCAGCTCCTGATCCACCAGCCCAAGGACCCCATCCCGTTCATGATTGATCATTTGCAACGAGACAACGATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092:ENSBTAT00000005345:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development