MmuINT0000405 @ mm10
Intron Retention
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28700164-28702773:+
Coord C1 exon
chr2:28700164-28700274
Coord A exon
chr2:28700275-28702688
Coord C2 exon
chr2:28702689-28702773
Length
2414 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATC
5' ss Score
4.28
3' ss Seq
ATATCTGTTTGTGCCCACAGAAC
3' ss Score
10.8
Exon sequences
Seq C1 exon
ACTAAGGAGCGGAGCGCTGTCGGAAACATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTTTCGAGATGATGCAG
Seq A exon
GTGATCAGGCGCCCGAGGATAGGGAATACGGCTACCGGGCCGGGCCGGCAGCATGGTCTGGGGGGAAATCCCTTTCCTCAGTTTCCCCACCTGTGAAATGGCGCAGTAGTCTCCAGGGCCTCTTCTGGCATTGTATGGGAAACCTCAGCCGGTTCCTGAGCCCTGAGTCTTACCTAAGCTGGGCCTTGGAAGCCCTAACAAGCTAGGCTCACCCACCTCACTCCAAGACCAGTTAAAGAGATAAGCAACAGAAAAAAAGAAAAAGTCAGAGAAAGGCTTATTTCCTGTGACCACAATGGAAGGAGGAACACGTTCAAGAAGTTCAGTGACCTGCTTCCCGGGGCTAGTTTTGGGGTCCACACAAGTCTAGTGTGATCCCGCACCTCACTGACCCATATCTGTCTCCGTTCCACTCCCTCCTGCAAGGTGGTCTGACAAGTTGGAGGAAAACTTCCCAGGAGACCCGCCCCTCTGGCTGGTGCCAGCCTTTTCCTTCTCCTGGCATGAGGTTCCTGGGAAATTCCAGTTCCCAGGACCAAACCGATTGTCTCAGCCGTCAGGCAAAAGACACATGTGTTTTGTCTCATGAGGGTGTCTTTGACCCTGTTAGGACAAGTAGGGGACCGTATAAGTTTTAGATGGCATCCCTATCCAGGTGGTCTCCTCTGGGGCAGCATATTTTCTACATAGCCTCTATCCTCAGAATTGGCCTTTTGAAAGCCCTCGTCCCTCATCCCTTATACTAGCTCCCAGCTTGTCCTGGTTCCCAGGCAACTGTGGCCTTCAGCCAAACCATATCCCCATCTATGTGTGCTCCAGTTTTTGACTTGTGCTCTCCAGAGGTGAAAGTGACTTTTAGGGGCTGGACCGATGAGCTGTCTAACAGTCAGTGATTCTGGGGGCCGCAGGCAAACTAGAGCTCAGTTTCTAGTACCCTATACTGCAAGCCTAGCATGCACACGCGCACACGTGCGCACACACACACACACACACACACACACAGACAGAGAGAGAGAGAGAAGGAGGGGGACACCGTGCTGGCACATGAGCCCAGGCCAAGGAGCCTGAGTCTACTGAGCAAGCTCCTTTGGAAAGTGTTAATGGAGGGGAGACCAAGGAGTGGCCAGCCACAAATAAAACAGCAAATCTGGGGGCACGAGAGGGGTGATATATGATCCTGGCCTGCTTTCTTGTTGGATTGGTGGGGCGATAACCAGAATACTTTATCTTATTATCATTTATTTTCAAATAATCTTAGACTTGGGAAGTTATAAAAATGGCGTTCACCTCTTGTCTAGCTTAGGCCGTGTAACCTTGGTCTTCTCAAAGCCGTGAAGCAGAAGTGGGTGCAGTGCTTGAGCCTCCACTGCAGGCTTCTCCTGGATCTCACCCCCTTTCACCTGCTCTTGGGTTTCTGTGGTGGTGTGTACAGCTCTGTGACGTTTTATCAGATGTCTGTGGCTCTCATGGGATTCACAGATCCACTGCTGTTCATCCGTGATAACAGACTGTCCTCAGACTTGGCTTCTTTTTGTCTTGTCCTGAGAAGGACTCATGGCCTTATCAGCCCGAAGCATGCAGATGTGTTACCTGTGTAACCTCTTAGTCAAGAAGTGAACACAACATCTCTAAGCACAGAGCCAGCCCAGCTGTGCCACTGAACGAATGGTAGGGGGCTGGGGAAGGAGGGCTGAGGCCCCAAGAAGAGGAGGGACTTTCGGATGAGATCTAGAGTCTAAACAGGACTCCCCATTGGTGCTCTTGACTACTCTGCACCTCATTGTCCTCATTGGCCCTTCCTACCTCTCCTGCAGCCCAGCTGCTGTCAGCTCTCCAGTTCCCTGGTGTGCCACTCTGAAAACTGCTTCCTCTGACGTGTTTGCTCAGTTGGTTAAATGGCCAACATCCAGGACTATTTAACTGCTTGGCTGATAAGTATTCTGTCCCACTTTGGAGAGACTCAGCCACTAGTGAGGGCTTCGTTTCGTGGCTAGCATCTGCACTGGGTACCTACTGTAATTGTGTAGACAGGGAGGACCGCAAAACCCATGGAGTGTCGAGCAGGAATAGGAGAGGCAGGGAACAGAGGTACACATGCAGGCCTGTGCAGGAGCAGAGAGCAGCAGGGGTTTATCTGGTGCACTGAGAGCTGATGATCAAGAAGCCAGGTCAAGGAGCAAGAGGCGTTCTAGGCAGAAGACCAGCATTCACTGAGGCGCTGCAACAGGACAGCTGTGCAGGACCTCGGGAAGACTGTGCGGGAAACACAAAGGGAGATGAGGTGGGGACCTGACTGCTTGGGCTTCCTCAGGCTTCTGCTGCCAGTGACACCAGCAGATGTTCCAACAGGTGGTCCCCATGGCAACCAGGGTCCCTGCAGGTGTTAACCTCTTGATATCTGTTTGTGCCCACAG
Seq C2 exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807:ENSMUST00000074156:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types