HsaALTA1042900-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13104]
Coordinates
chr7:100049774-100051610:+
Coord C1 exon
chr7:100049774-100049841
Coord A exon
chr7:100051478-100051482
Coord C2 exon
chr7:100051483-100051610
Length
5 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TAATTTTTTGTATTTTTTAGTAG
3' ss Score
6.67
Exon sequences
Seq C1 exon
ACTTCCGGGTGCGCGGTCCCGAGGTACGCGGTGCGGTCTCCCGGTACCCGGAGCGGCTCTGATTCATG
Seq A exon
TAGAG
Seq C2 exon
ACGGGGTTTCACCGTGTTAGCCAGAATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACGGCGCCGGGCCCCCTAGGGATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529-0-5,0-4,0-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGCTCTGATTCATG
R:
AATTCCAGCACTTTGGGAGGC
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains