HsaINT0188820 @ hg38
Intron Retention
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13104]
Coordinates
chr7:100049774-100057405:+
Coord C1 exon
chr7:100049774-100049841
Coord A exon
chr7:100049842-100056910
Coord C2 exon
chr7:100056911-100057405
Length
7069 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGGTAACTATATTTTCTTAGGTT
3' ss Score
6.3
Exon sequences
Seq C1 exon
ACTTCCGGGTGCGCGGTCCCGAGGTACGCGGTGCGGTCTCCCGGTACCCGGAGCGGCTCTGATTCATG
Seq A exon
GTGAGCCTGCTGGTCGCGGGTTAGCGAGGCGGACAGGAGAGGGAGCCGTGGCTGAATGGTCTGGGGAGGGAGGAGTGGGTTTAGCAGCTGTGGCTTCCGAGGACCCCACCTAGACCGGTCCTAGCAGGGCTGTGGGGAGGAGCTCCTCGTCCCCGCCCAGGACCAGCTGGTGGGGGCGCTGGCTGCCTGGAAAGCCTTTTCTTCCACTTGGGGCTTTAACAAATGAAAGCTGGAAGAACAGATGTTTTGGAAGTTCTTTCGCGTTCCAGAATAGTTTTTTTTGTGCGTTCCCCAAGCCAAGCCGTCTATCAGTCTGACCGTGGCCGCCTTTTTTCCCTTTCTCTGAACTGGAGGTCCGAACGCAAGGCTCATTGATGGCAATACGCCCAAGGTGTTGGAAACCTGTGGGAAGCCGAACCTCATTAGAAGTGTTGGGTAGAATCAAATCCAAGGGAAGAAATAGTCCCCTCGGGCTTTGTTCGGGCTAGAACACACACACAGAATAGGGATCTGCTCATGGTTTAGAAAAACAGTCTTAAAGAACCATGTATAAATAAAAGAGTGTCAGGACAAAGTTGATTTGGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCAGTTCGGGAGGCCGAGGCCGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAACCCTGTCCCCACGAAAAATACAAAAATTAGCTGGGTGTGGTGGAGCGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCACCAGGTGGAGGTTGCACTGAACCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCAACACTTGGTCTCACAAAAAAAAAGAACGTTGATTTGATGGGTGAGGTACTTGGAAACCCACGAAATCTAAGGAACAGTTGAGCTGTGGAGAGGAAAAGAATTAAGAGGCAAGATAATTGTTTTCAAGTGTTGGAAGGCTGCTATGGAGAAAGTGAGTATTGGTCTTGGACTAACCTAGGATTTTTGAAATGATGCGGAATTTGATTCAGGTTAAAGAATTTGTGTGGCCGGGCGCGGTGGCTCATGCCTGTAATCCAGCACTTTGGGAGGCCGAGGCGAGTGCATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTACAAATACAAAATTAGGCGGGCGTGGTGGCACATGCCTGTAAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGAAACAAGAGTGAAACTACGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAACTTGTAACAATTAGTGGAATTCTGTGGCTCAAGAATTATCTAATTTGGCTGCCTAGGGATCTAGGGATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCTAGGTTGGAATGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCTAGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACAACGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGAATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACGGCGCCGGGCCCCCTAGGGATTTTCAGGTACGGACTGAGTGTGAAGCATTTTAGCACAAGTGGGTAAGTGCTGTTCTACTTTTAGAATCTATGGTAATTTGATTTTTTTATGCCTCATCTTGTTACAGAATGGACTTGGGGCGCTTTCATAAGGGCATATAAGCTGTGGGAGATTGGCATAAAGGAGGAGGGAAAATGGACACAGAACAAGGGCCTTCTGTTTATGATAGACCATGAACTTTTGCTTGATGGACTTCTTGAGATAAACAGTCTAGATAGCTTTTAAAAAGTCACTGTGATTGTAGACAATGTGAGTTAGTAATGAAGCATTTGATTTCTAGCCGCATGCTTCTTTATTTTTTTAAGAGACAGGGTTTTCCTTTGTCACCCAGGCTGGAGCACAGTGGTACAGCCACAACTCTGCAGCCCGGAACTCCTGAGCTCAAGTTATGCCTCAGCCTGGGCAACAAAGCAAGACTTCGTTTCTACAAAAATAAGTAAATCAATAAATAAATTTTTTTTAATTAGCTAGATGTGGTGATGCACACCTGTAGTCCTGGCTACTTTGGAGGCTGAGGTGAGAGGATCGCTTGAGGCCAGGAGTTCAACGCTGCAGTGAGCTGTCATGGCACCACTACACGCCAGCCTGGGCAACAAAGCGAGACCCTGCCTCTGTAATTGAAAAACAATAAAATAAAGACCCAGTGAAGTGGTTCACGCCTGTAACCCCAGAACTTTGAGAGACCAAGGCAAGAAGATGGCTTGAGACTAGGAGTTCAAGACTTCCGTGAGCTGTGATTGTGCCACTGCACTCCAGTCTAGGCAACAGGCTAAGACACTGTCTCTAAAAAATAAAAAAATTAAATTAAAAAAAAAAAGTGAAAGAGGATTCGGGATGACCCCAGGTTTTTCGGTCCAAGTAAAAAGAACAATGAGAGTTGCCATTAGCTGAGATGAGCAGCTTTTGAGGGAGAGATGGGAATTCCATTTTGGACATGTTAAGGTTGAGATGTCTTACTGGACATCCAGGTGGTAATGGCAAGTGGGTAGTTGGTCGTATGAGTCTGGAGGTCAGCAGGGAGGTCTAAGTTGGAGATACAGTTTGGGCAGTTGTGAGTATATAGATGGTAATTAAAACCATGCAACTTGTGAAATCACCAAGGAGAGTGAGTGCAGGAAGGAGGAAGGGCACCCGGCCCTCTACTCGTTTGTAGTCTTTATGCATTGTACATTTGAGTTGTGTGCACCGCAAAACTGATGTACCACCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTCTGCGAGGCCGAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATATAAAAATTAGCCGGGCATGGCACGCACCTGTAATCCCACCTACTCAGGAGGCTGAGGCATGAGAATAACTTGAACTCGGGAGGCGAAGGTTGCAGTGAGCCAAGATCATGGCACTGCACTCCAGCCTGGGCAACGGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAACTGATGTGCCTAGAATAAATCACTTAGCTAATGAGCTTACCCAGCCAACTGCCCAGCAGCAACATCCAAGGAAACTTTTTTTTCTGTAATTTGCAGAGGCAATCATGTGATCCAGTGGCATCTGTGAATTTGGATTCACCAAGTTCTCAGAGTGTATCGCACATGAATGTTATGTTACTACATGACGCTCCCTGTGTGATGCCAGCAGGTGCTGCATGACTCCCTGGTGAATTGCCTTGTTTCCCAGGCCAGATCACAGAAGCTGAGCAGCCCAAACAATGGTTTCTTTCCTGGTCTTAGGGTGCCCTCCTCTGGATAGAGTATTAAATTTTGTAACAGTTACGTAAAGTTAATCTGCCACTGAGGAGGGCTCTTACATACATACATACATACATACATAATTTTTTTTTTTTTTTTTTTTTTGCAACAGAGTCTTACTCTGTTACCCAGGCTGGAGTGTAGTGACAGGATCTTGGCTCACTACAACCTCCACCTCCCAGGTTCAAGTGATTCCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGCCACCACTCCCAGCTAATTTTTGTATTTTTAGTGGAGACTGTAACTTGTAATTTTATGGCAACTATATTTTTTTAGGTTTAACATGTGGCCCTAAAGAACCAGAAACCGAAAGGAACCAGTATTCCTGCCCCACAGAGTCCCATCTTTAGTGAGGCTATTTCTGGAGTTTATATGATGACCAAGATACTAGGTATGGCCCCAGTTCACCATGTTGGCCAGGCTGGTCTCAACTCCTGGCCTCAAGTGATCCGCCTGCCTTGGCCTCCAGAAGTGCTGGGATTACGGCCGTTAGCCACCACGCCCGGCCAGTCGTTTTAAATATTCTAAAGAATGCTCTCCAGCACAGCTACCTCATTATTTCTTGTTTATTTTAGTCTTTGGTGCTCAGGCCTTTGTTTTAGTAGGTGAGATGACGTTGCATCTCCCCTGACTCAATTTTTAAGTAGTCCTCAACTTGGGCACTCCTGTGGTATGTACTGAGTACATACAGACTTATTTGGCCAAAGAATCCTTTATTCAAATTATTGGTTATAGTGTGTTTTGTTTTTTGTTTTTTGTTTTTTTTTTGCAACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCACGTTCAAGCTATTCTCATGTCTCAGCCTCCCATGTAGTTGGGATCACAGGTGCCTGTCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGTCAGGTTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACCGCACCCCGCCTTAGTTATAGTGCTTTTGAACAAATTTTGGGAAATAATTCTGTATGCATTTTTTTCCGTGCCTTACAGTTTCCCTTTTCATGCTTTGGTTTGCTTCCTGATGTCTTAATTCCACTGCTAAACACTCCACCAACATTTCTTTTGGTGGAGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGTACTCTAGCCGGGGCAGCAGAGTGAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAGACTAATCAAAGCCTTAATTTCATAACTATGAACCGTGTTTACAGAATGTTAGCACTAAAGTCCATTTTGTTTGTCAGAAAACTACTTATGATCTCTCTTTTTTTTTTTTTTTTGAGACTGAGTCTTGATCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCATCCTTCCCCTCCCAGGTTAAAGCGATTCTCCTGCCTCAGCCTCCTGACTAGCTGGGATTACAGGTGTGCAACACCACACCCGCCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCCGCCTTGGCCTCTCAAAGTGCTGGGATTACAGATGTGAGCCACTGCACCTGGCACTTCAGTTTGTTTTGTTTTTATTTTTTGAGACAGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCATTGCAACCTCTGCCTCCCATGTTCAGGGGATTCTTGTGTGCCTCAGCCTCCCAAATAGCTGAGATTACAGGTGCACACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTGGTCTCAAGTCCAGGCCTGCCTCGGACTCCCAGAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCGACCTCAGTTATTTTTAATGTACTAGTTAATTACACCCTTCGAGCATGACTCAGGTCATACTGACAGGCCCAGTCATTTGACTAGTGAATTTTCCTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCTGTTCACTGCAAGCTCCACGTCCCTGGTTCAGGCCATTCTCCTGCCTCAGCCTCCCGAATAGCTGGACTACAGGCGCCTGCAACCACGCCCGGCTAACTTTTTTTTGTATTTTTAGTAGAAACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCCTCTTTTTTTTTTTTAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCCGTCTCCCGGGTTCACACCATTCTCCTGCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCAGCACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCTTGACTAGTGAATTTTCATTGCTCAAGCTAAATGTCTTAGGTTTAAACAGATGGCATCTAGCCAGTAGATAGCTTGATAAAATCTCAGAAACTATAATATCTATAGTGGTGAGATTCTGAACTAGTTTTGGAGCAAAGTTAACTTTAAAATTATGCCACATTGCACTTTTTAGGAAAGTGGAGACCACTGAAATCAAAGTAGGATATCCTGAGCTGATTGCAGAAAGATTTTTTTTTTTTTAGAGATGGAATCTCGCTCTGTTGCGCAGGCTGGAATGCAGTGGCGCAGGCTTGGCTCATTGTATCCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGATTACAGGCATCCATCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGTGATCCACCCGTCTCAGCCTCCCAAAGTGCTGGAATTATAGGCATGAGCCACTGTACCCAGCTCATTCCAGAAAGATTTTGAGCAGTTGTTTTTGTATGGTAGTTTTATGGTGGACATAATTTCCACAATTTCTTGTGTTAAAGGTATGGCTGTAAAGACCCAAAAACACTTTTCAGTTTGATTATTTTTTGGTAACTATATTTTCTTAG
Seq C2 exon
GTTTAACTTGTGGCCCTAAAGAACTGGAAACCCAAAGGAACGAATATTCCTGCCCCACAGAGTCCCATCTTTGGTGAGGCTGTTTCTGGAGTTTACATGATGACCAAGGTACTAGGCATGGCCCCAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGTGGGGCCTCTGATGGTAAAAGTCGAGGAGAAAGAAGAGAAAGGCAAGTACCTTCCTAGCCTGGAGATGTTCCGCCAGCGCTTCAGGCAGTTTGGGTACCATGATACCCCTGGACCCCGAGAGGCCCTGAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCATTGCCCGGAGAGCGCTGAAGAGGCTGTCACTCTCCTCGAAGATCTGGAGCGGGAACTGGATGAGCCAGGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529:ENST00000292450:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.217
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains