MmuINT0180850 @ mm9
Intron Retention
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138559064-138566918:+
Coord C1 exon
chr5:138559064-138559148
Coord A exon
chr5:138559149-138566205
Coord C2 exon
chr5:138566206-138566918
Length
7057 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TGGCAACTATGTTTTTGTAGGTT
3' ss Score
7.43
Exon sequences
Seq C1 exon
TGCTGTAATTACAGGTATGCACCACCACGACTTCAGCTTGGAGTTTCCAAGTGCAGAGTGTCTTAAGGGCATTATCTACTACAAG
Seq A exon
GTAATAATTGCTGTTCATTTGATGCAATCTGTGATAGTTTGATTTGTTTACACTTCGTCTTGCACAGAATGAATTTGAGGCTGATTAAGGGAGTGTGTGTGTGTGGGGGGGGGACTTATAAACTGTAGAATTCGCATAAAGGAGGGAAAAATTGGGAAGTGACCAAAAGCCTGCTGCTAGACTTCGAGAGTTAGGTTTTTATTTTTTTACTCTGTGTGTGTGTGTGTGTGTGTGAGTCAAAGGATAGTTGGCATAGTTGACTGCTTCCCTTCCATTACATGGACACCAGTCTCAAAACAGGCAGCAGGTCGGTTGCATTTGTTACCCACTGAGCCATCTTGTCAGTTGAGTTAAACCTTTAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACTTGGTGGCTCATGGCCATTTGTAATGTGATCTTATGCCCTCTTCTGGTGTGTCTGAAAACAGCAACAGTGTACTCTTAGACATAAAATAATACATGAATCTTTAAAAACAAAACAAAACAACCTTTAGATAGCTTTGGTTTTGCTTTTTTGTTATTTTTCAAAACAGGGTTTCTTTGTGTTGCCCTGTCTGTCCTGGAACTCTGTTGACTATGCTGGCTTCTAACTCAGAGATCCTCCTGCCTCTACCTTCCATGTGCTGGGATTAAGGTGTACATACCACACCCTGCTTTAGGTAGCCTTTTTAAAGTTTTTTTTTTTTTTCTATGAAAGTGTTAAATTAGGCCTGTTTTTCTACCCACATACTTTTTGATTTTATGACTATTTAAGGAATTTTCAGAAACCAAGACCTGGAGGGCATCTTCACATGGCAAGCTCAGCATTACCAAATGTGAAACATTGGCTTTCTTTGTGTGCAGGGAGCAAGATGCCAAGATACTTTAGTACCAGATTTTTTCTTTTCTTCTTTTTGGTTTTTTGGTTTTTTTTTTGGTTTTGTTTTGTTTGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCGGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACCTGGCCAGATTTTTTTCTTAAATCTTGCCAAAACAAAAACAAAGCAAAAGACAACATGTCAGTCATGTGGAAGTTTTTCTTTTTTTCCTACTTCTTAGCCTATCTTCCACCCTGTTCTTCTCCCCACCTCCTTTTTCTTTTTTCATTTTCTTTTGTTTGTTTTAGAGAGAGGGCACTGCTGTGCATCTCACCATGCAGCTCAGGTTCCGGCTTTGACCTGTCTCAGAATGCTGGGATGGCAGCCAGCTGTCCCATTGCAAGCATAAAAATCTCACTTATGCATGCTCTTACTAAATATACTCCAAGAGTGAGAGGACGAAACTCACCTTTCTTTGCTTCTCATCTCCCACTAAGTAGAAAGCTGCAGGAAGGCAGGGTACACCCAGTGGTCAAGTGGCAGGTGGTCAGTTAGTCAGAAGATATTCTAAGGAATCAACTGGGAAATACCAAATGTTCAAAACTTTTTAAGCATTTTTGTTTGTATCACATATTTTGATTGAATTTTTCTATGAAATTTTTTTTTCAGCGATATATATCTTTGTCAGACTAAATAACTGTATGTTGGGCTTGGTGACACAGCTTTAATCCCATCACTCAGGAGGAGAGGTAGGCCAGTCTCTTATGCCTTCCAGGCTATGCAGTGAGACCTTGTTTTCCCATCCACTCTTCTGTTAAAATATATATATATATATATATATATCTAGGGGGTGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGATCCTGAGTTCAATTCCAGCAACAACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTCAAGACAAATACAGTGTACTCTTTTTTTTTTTTAAAGATTTATTTATAATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAGCCACCATGTGGTTGCTGGGATGACCTTTGGAAGATCAGTCAGTATTCTTACCTGCTGAGCCATCTCACCAGTCCTACAGTGTACTCTTATAGATAAAAAAATAAAATAAAATAAAATGTAACTGCAGGGCTACAAAAGACCGGTCAGCCCATAAACAGGCTGTCCCCAGGCATGCTGGCCTGAGTTTGATTCTGGAACCCACATGGTGGAGGGAGAGAACTGAAAGCTCTGACCTCTAACCTCTGTACATACTATGGCATATATACCTCCTCCCCTCCCCTACACACACACACACACACACACACACACACACACACACACTTCATTAATTATAAAGGGAAGAAACTGGAGAGATGATTCCGTGGTTAAGAATATGTATTCCTCTTGGCAGAGGCCTCACATTTGGTTCCCAACACCCATGGTGGGCAGGTCACAAACGCCTGTATCTCTCAGGTTTCCCACGCTGATCTCTTCAAATGCACGAGGGTGTGTGCTGTGTGTGCATGCACACATACACACACATATACAAGTATTGTTAGGTTTTTGTTTTTTTTTTCCCACTTTCACCTAAAGACACTGTCTTAGTTAAGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCAAGTCTTAATAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATTAAGGAGGGAGCATGGCAGTATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATGTCTTCATCCAAAGACTGCTAGTGGTAGACTGACTTCCAGGCAACTAGGGTGAGATCTTATACCCACACCCACAGTGACACACCCATTCCAGCAAGGCCACACCTTCAGATGGTGCCACTCCCTGATCCAAGGATATACAAACCATCACATTCCACTTCCTGGTCCCCATATACTTGTTCAAAAACATGAGTCTATGGGGGCCATACTTAAACATAGCATAATGCAAAATGTATTTAGTCCAACTTTCAAAGTCCTCATAGTCTATAGCAGTCGCAACAATGTTAAAAATCCAAAGTTCAAGGTCTCTTCTGAGATTCATTCAATTTAATTAACTGTAATTCCCAAAGCAAGGCAGGAAACCAGCTGGGCAAACTCCAAACTCTGCATCTCCATGGCTGATGTCAAAGCGTCTTCAGATCTCCACTCCTTTTTCATCTCTGTTGACTGCAACAAACTGCTTTCTCCTGGGCTGGTTCCACTCCCTGTTAGGAGCTTTCCTCAGCATGTATCCCATGGCTCTGGCATCTTTAACATCCTTGAGTCTCCAAGGCAATTTCAATGTTACAGCGTCTTGTTTCAGTGTCTGGGATTCCACTTGATCTTTTGGACTCCTCCTAAGGGCTGGCATCACTTCTCCAGCTCTGCCCTCTGTAGCACTCTAAGCTTAGGTTGATCCACTCCACTACGGCTGCTGTTCTTGGTGATCATCCCATGGTACTGACATCTCCAATACACTGGGGTGTTCCACTCCAACTAGGCTTCACCAATAGCCTCTCAAAGGCTCTCTTCAGGGTGCCAAGCCTCAAATCCTTTGCACGACCCCTTCAGTCCTGGGCCATCAACTACAGCTGAGGCTTCACCTTCTCCAATGGCCTTCCCTGGCCTCTCACAGTGCTAAGTCTCAGCTTCTCTCCATGATCCCTTCATTCCTTCACAAGCAGTACCACCTGAGTGACTCTTACACATTACCAAGTCCAGCCGCAGCATGAGGTACAACCTTGGGTATCTCTGGAACACAGCTTCTTTGTGCTCCCAGAAAACAATTTCCAGAAGATTTCACCTCAGTGATGCTGGTCTCTTCTTAATTACCTCTAATTCCTTAGCTCCAGCTAACCAGCATCAATTTTCCCAGTAGTTCCTTCCATTCTTAACTCTAGAGCCAGAGCCGCATGGCTGAAGCCGCCGAGTTCTGCTGCTTAGAGGAACTAGAACATGATCCCCTTGTACTATTACATTATCACTGGCTTTATCTTTTCTAAATCCTTCACTGCCTAAGCTTGGCTATCCTGGTTCTTGCTCTGTAGATTGACTTGAATGCAGAGATCAGCATGCCTGTCTCCTGAGATTAAAGGTGTGTACCACCATGCCTGGATTTAATTTAGCTGGGTAGGATCTTGCCTCAAGGTCCCACTCCCTTAATCTGTTATCTCCTAGAACACAGGAATTTGTTCCATTTCACTTCCTGGTACCCCTTTATTACTCGAACCATATATTTTATATTTTTCCTTTCTAAGCTTGCTATGCTTCTTCAAACTTCTCTTCATAAGACTTAACCAGAGAACAAAGTCTCTGCTGGGCTTCTTTGAAACTTCTTTTGTCAATGCAATTAATCCAAGTCTCTTCACCTTAGCCTCAGGCAAACTTTTCAGACAAGGGCAAAAAGTAGCCACATTCTTCTCCAAAATACCACAAAACCAGTCTTTATGCCACATTCTGAAATTCTTCTCCTTTGAAATCTCTTGGGCCAGGTCAACACAGTTCAAATTACTCCCAGCAACTAAGTCTTCCATATTCCTACTAGGATGACCCATTAAGCCCATTTAAAGCATTCCACTGCTTTCCAAATCCAAAATCCCCAAATCCACATTCTTTCAAATAAAAGCATGGTCAGTCCTATCATAGCAATACCCCACTTCTGGTACCAACTTCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCAAGTCTTAATAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGAGGGAGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAAGAGCTGAGCGTTCTATGTATTCATCCAAAGACTGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCCAACAAGGCCACACCTTCAGATGGTACCACTCCCTGGTCCAAGGATATACAAACCATCACAGACACATAAAAGAAACTTGAATATTCGATTTGGGAAGTGACTCAGTTGGTAAAGTGTGTTCTGTACAAGCATGACTACCTGAGCCCACAGGTAAAAAGCCCAGATATGTCTGCTTGTACCTAAAGTCTTAGTAATGGAAGGGCAGAGACTGGCAGAGACTTGAGTTCACTGGCCAGTCAGCCAGCCTAGCTGGTCCATGCACTCCAGGTTCAATGAGAGACCCTGTATCAAAACAATGAGATGAATAGTGATAGAGGAGGACCTCTGACATTGACCTCCGGCCTACTACACACACATGCATGCACAGGCAAGCTCACCTGAACATATGTACACACACACACACACACACACCCTCACACAGTCACACAAACCCAAAAAAAAGGAAAAAAAAATTAATATGTTTTCCTTAAAGTAAATCAGGTAAGATTCAGTGTGCATCCTAATTAGGTTTTCACTATTTTTGTTTTTAAATTTTTGTTCATCTATTTCTTTGGTGCTAGGGGTGGAACCCAAAGCTTTGTATCTACAAGGCAAATACTCTACTTTTGAACTATCTTCCTAACTCTTATACTCCATTATTTTTAATAAGCTAGATAATTCCAGCCTGGAACATACAAGCTCATGCTGACAAACACAGTCATTTGACTACTCTACTTTTTTTATGTTCAGACAGTATTAGATAACTTGCTGAAATCATAGAAACTATGATACCTATAGTCATAAGATGTGAAACAGTATTTGTAGCAAAGATCTATTTTTAAAATTATGCCACTTTAGCCGGGCGTGGTGGTGCACACCTTTAATCCCAGCACTCGGAAGGCAGAGGCAGGCAGATTTCTGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAAAAAAAAAAAAAAGCCATTCTTAGGGAAAATAGATATATCTCAGTCAAGTGAAAGTAGGGTCTAGTTAGCTGACTCCAGAGTGATTTCAAACAATATATACTTTATACTAATAGTATTTTGTGTGTATTACTTATACAACGTAATAGGCTTCATTATGATACTTCCATGTATACCTTCTTAGTCTCTTGTATTGCTCTAAGAGACCATGACTAAGCCAACTCTTACAAAAGAAAGTACTTAACTAAAAGCTAGTTTACTGTTTTAGAGGTTAGGTCCGTTATCATCATGGCAGGAAGCATGGTGGCATGCAGGCAGGCACTGGAGCAGTAGCTGGGAGCTGCATTCTAATCTGTAGGCAGAGAGAGCAACACTGGGTCTAGTGTGGGCTTTTGAAACCCCAAAGTCCACCCCCATAACACATTTCTACCAATGAGACCACACCTCCTAATCCTTCTAATTCTTCTAAATAGTACAGTCTCTGAGCCTCTAGAGGGCCATTCTGACTCATACAGTCACAACACATAGAACTGCTTTGATCATACTCAGTCCTTAGTTCCTTGTCTTGTCCCCTCATACTCCCTTGACTTTGATGTCTAGTCCCATTCTTCACATTCTGCATAGGAGAGAGAACGCGCTTATTTTGCTGAGTTTGGATTATCTTGCTTAGCATGATCATCTCCATTTCCATCCATTCCCATCCATTTTCCTATAAAACACATTTCTGAACAACTGTGTTTTATATATATTTGTGTGTGTGAGGTGCACATATGGTCAGAGGACAATTTGCACAAGTTGGGTCTTTCCATATACCACTGTGTGGGCCACAAGGGCCAAACCAGGCCTACCAGCAAGCACTTTGATCCACTGAGCCATCCTACCACCTCTGAACAATACTTTTTATACGGTGGTTGTCTGGTGGCCCCTGTGATAAAAACCAGAAAAACATATTTTCATTTTTTGATAATTTTATGGCAACTATGTTTTTGTAG
Seq C2 exon
GTTTGAAGAGTGGCACTTTAAGAACCAGAAACCCAAAGGTACCAGGTCTACTCCTAAAAGTCCTGCTGGCTCGGGAATCTGTGATGACTAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAATCTATGGGACCTTCGCCCATTAAAGTAGAAGAGGATGAAGAGAAAGACAAGTGCTGCCCTACCCTAGAGCTATCCCATAAGCACTTCAGACAGTCTGGGAACCAAGATACCCTTGAGCCAATGGGTCCTTCGACCATTAAAGCTGAAGAGGATGAAAGCAAAGACAAGTGCCGCCCTAACCTAGAGATATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCAAGACACTCTTGAGCAGTTGGGACCTTCGACCATTAAAGCTGAAGAGGATGATGAGAAGGATAAGGGCCACCCTAGCCCAGAGATATCTCGACAGCGCTTCAGGCAATTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTGAGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCCGAGATCCACACCAAAGAGCAGATTCTAGAGCTACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGACCTGGGTACAGCAGCACTGCCCTGAAAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTTGATGAGCCAGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-Zscan21:NM_011757:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=PU(97.9=44.8),PF034808=SBP_bac_7=PU(67.9=26.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: