RnoINT0169478 @ rn6
Intron Retention
Gene
ENSRNOG00000039234 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:RGD Symbol;Acc:1309981]
Coordinates
chr12:19262977-19268721:+
Coord C1 exon
chr12:19262977-19263057
Coord A exon
chr12:19263058-19268006
Coord C2 exon
chr12:19268007-19268721
Length
4949 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TGACAACTATGTTTTTGTAGGTT
3' ss Score
8.15
Exon sequences
Seq C1 exon
CCGGTTGTGCTATGGTTCAGCCGCTGTGAGGATTCCAGACTCCAAAGCGGTTCTGAGTCACGGTGAGCCTGCGAGTCCCAG
Seq A exon
GTTAGCCTAGCGGTCGGGGAAGCGTTGGCCGAAAGGTTTAGAGAGGGTGGGACGGGTTTAGCCGCTCTGGTTCTGGTTCGGGGAATTCTTCCATGGTGGTTCTGGGAGATTGTCTAAGGAGGAGCGCCCCGCCCAGCCGTTGTAGGCGCCGCTCTGAGGAAAGCCTTTTCCACCCCCGAGGGCTCTCTGGAACAAAACCCTGTTTCTTTTGCTTCCGGAGTCGCTTTTCTGGTCTCTCTGTTATTGTCTGTTAGCCCGAGGGGAAATACCTTCTTTTTTTTCCCCCCGAGTTCTCGCCCTGAGATCTAAACTCAGGACTAATTGTAAAGAAGCCCAATGGTAGAAACCGCCTGTGAAAACCCGAATCTCATTAATCTTGGGTAATGTCCAATCCAGGCGGGGAATTAGTCCCGTTGGGCTTTGTGTGCACAGAACAAGGATCTGCTCGAGTCTGGAAAGATTTTTAGACGATCGTTTGTAAAACGAATATAGGATTAAAAGGTGATTGATTTATTTGGTGGGTGACATAGTTGGAAATCTGGGTTGAAAGGGGACAGAAAACAACTATGAACAACAACAACAAAACATCAACACACGAAAGTTGTTTTTCAAGTGCTGGAAGGGTTCTGAAGAGAAATCGAGTATTGGTTCAGGGCTATTGAAATGATGTAGAATTTGGCTCACTCTGAGAATGTCTTAGCTATTAGATCTGCCCAGCAGTTATGCTCCTCAAAATTATTGCCCTGCCTAGAAGCTTTTTGAAAATTAGTTTGCTCGGTTTGAGATAGGGTCTTAATGTGTAGCCTATGTTAGTGATCCTCCTGTCTCTGTTCTCTTCAGTGCTGTAATTTACAGGCGTGTGCCACCATGACTTCAGTTTCCAAGTACAGAGTGTCTTTAAGGGCATTCGCTGTCACTGGGTAGTAACTGCTGTGCATTTGCTACAATCCGTGATAGTTTGATTTATTTATACATCCGCACAGAACTAAATTGAGGCTGATTAAGGGAGGGGGGACTTATAAACTTTGCAGAATTCGCATAAAGGAGAGAAAAGTTGGGAAGTGACCAAAAGCCTGTCTTGAATAGATCATAAGCTTCTGCTGCTAGACCTTAAGAGTTAGGTTTTTATTTTTTACTCGCGCGCGCGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTCCGTCTGTCTGTCTCTGTCTGTCTGTCTGTCTGTGTATGTCAAAGGACAATTTGGCACAGTTGAGTGCTTCCCTTTTATTAAATTATATGGGCACCAGGCTCAAACCCAGCAGCAGGTTGTGTCCGTCACCCACCGAGCCATCTTGCCAGCTGAGTTAAACCTTTAGATGGCTTTGTTTTTCATCTTTGTTATTTTTCAAGACAGGGTTTCTCTGTGTACCCTGCCTGGCTGTCCTGGAACTCTGTCATAGACTATGCTGGCTGGCTTCTAACTCAGAGATCCCCCTGCCTCTACCTCCCACGTGCTAGGATTAAGGCATGCATACCACACCCTGCTTTAGATAGCCGTTTTAAAGTTACTTTTTTCTATGAAAGTGTTAAATTAGTCCTGTTTTTCTACCCAAATACTTTTTGATTTTATAACTAAGAAAAATTTCAGAAACTTAGACCTGGAGGAAATCTTCAGATGGCAAGCTCAGTATTACCAAATGTGAAATTACTGGCTCTCTTGGCGGGAAGGGAGCAAGGTGCCAAGATACTTTATTACTAGATATTTTTAAATCTTGCCAAAACCAAAAAGGCAAACAAAAAGACCCCACATGTCATGTGGAAGCTTCTCTTTTTTCCTACTTTGTAGCCTATCTCCCACCCTGTTCTCCTACCTCCTTTTTATTTTTTACTTTGTTGGTTTGTTTTTGAGGGTACCGCCTCTCACCATGTAGTGGGGTGCTGGCTTTGGCCAGTCTCAGAATGCTGGGATGGCAGTCATGATGCCCATCACAAGCACAAAACGTTCATTTATGCATTCTCTTACTAAATATATTTAGGCTCCCAGGAGTGAGAGGCTGATACTCAGTATTTCTTTGCTTCTCATCTCCCACAAAGTAGAAAGCTCCAGGAAAGCAGGGCATACCCAGTGGTCAAGCAGCAGGCGTTCAGCTACTCTTCTGTATTCTAAGGTATCAACTGGGAGATACCAAATGTTCAAAGCTTAGAAGAAAAATATTTTTAAGCATTTTTTTTTGTTTGCATCACCTATCTTGATTGAATTTTTCCCCTCAATTTTTTCAGCAATATATATCCTGTCAGACTAAAGAACTGTAGCAATTGGGTGCCTGGATGAGAGTTGTCTAGTGGTTAAGTAGCACAGACTTGCCTCTTCCAGAGGTCCTTTGTCCACCGTCTGGTCCAGCGGTGCCTGGCGCGGTAATATCTTTTTAAAAAAGGGGGTGGGATTTAACTCAGTTGGCGCCAAGGCCCTGGGTTCGGGTCCCCGCTCCGCCCGAAAATAGAAAAAAGAGAAAAAAAAAAAAAAAAAAGAACTGTAAGCCAAATTAATGTTGGGCCTTGGCAACACAGCTTTATCCACCACTCAGGGAGGAGAGGGAGGTAGGCCAATCTCTCATGCTTCCAGGCCAGGCAAGGCTTGAGCACGAGGACCTATTCTTTTGTCTTCACACCATGTCTTCCGGTTTTTTGTTTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTTTGGTTCTATTTTCGGAGCTGGGACCGAACCCAGGGCCTTGCACTTCCTAGGCAAGCGCCTCTACCCACTGAAGCTAAATCCCCACCCCCCTTTTTTTTTTTTAAAGCCTAGGGAGACTGGAGAGATGGCTCAGGTTAGAGCCTGGGGCTGCTTTTCCAGAGTCCTGAGTTCAATTCCGAGCAACCACATGGGTGGGCTCACGGGCATCTGTAAATGAATCCTCCAATGCCCTCTTTGGTGGTCTGAAGTACTGTGTCTTATTAACAAAAGGATCTAACTGCATTGGGCACGCAAGGATGATGGCGTCCCGCCCATAAACAATGCTTTTCGTCTAAGCGATGGTTGGCCCTGAGTTTGTTTGTCCCTGGAACCCACATTGTGTTGGTTGGCGACTGTGGTGGACAGGAGAAAACTGGAGAGCTAATTTAACTCTCCCTAGACCTCCTGCTACTATGCCTCCTGTTCCCCCTACACACAATTGATTAATTACGAAGGGAAGATAATGGAGAGATGGTTCAGTGGTTAATATGTATTGCTCTTGGCAGAGAACCCAAATTTGGTTTTCAGCACCCATGTTAGGCAGTTCACAAATACCTGTAGCTGTAGGGTTTCCCACACTGACCCCTATAAATATAAGAGTGGGTGTGCGTGCACACACACAAAAACCCCAAGATTTTTAAAAAATTGTTCAGCTAAAGACATTTAAACTTGAATATGGGGTTTGGGAAGCGTTTTCTGTACAGGCCTGAGTACCTGAGCCTACAGGTGAAAAGCCCAGATACGTCTGCTTATGCCTGAAATCTCAACCCTTATACTCCACTATTTTCTGCCTCTGGAAGGGCAGAGACTGGCAGATTCCTGGTTTCACCAGTCCATACACTCCAGGTACAGTGAGAGACCCTGTCTCAGAACAATGAGATGAAGAGTGATAGAGGTAGACCTCTGGCATTGACCCCTGACCTATACACACATGGCATGCACAGGCAAGCTAACCTCTACATATGTACACACACACATACAGGCACACAAACACAAACCCAAAAAGGAAAAGAAATGAGTGTGTTCTCCTTAAAGTAAGTCAGGTAGAGTTCAGTGTCCATACTAATTAGGTTTTTGTTCTTCTGTTTGTTTGGTGCTAGGGGTGGAACCCAAAGCTTTGAATCCTCAAGGCAAATACTTTGCTTTTGAACTATCTTCCCAATCCTTATACTGCACTATTTTAATAAGCTAGGTAGCGCTAGTCTGGAACATACATGCTCGTGCTGACACAGTCAGAATTAGAGAGCTTGCTGAAACCACAGAAACTAAGATAGCTGTAGCTGTAAGATGTGAAGTAGTACTAATTTGTACTAATTTGTATGAGTTAATAGTACAAAGTACTTCGTTATGATACTTCCATGCATAGCGTCTTAGTCTCTTCTGTTGTTGTAAAAGACACCAGGCCTACGCTAACTCTTAGAAGAGAAAGTGCTTAATTGAAAGCTGTTCCAGAGGTTAGGTCCATTATTATCATGGCAGGAAGCATGGTGGCACGCAGGTAGGCACTGGGGCAGTAGCTGAGAGCTACATTCTGATCTATAGGTGGAGAGAGCAGCACTGGGCTTAGTGTGGGCTTTTGAAACCTCAAGATCCTCCTCAGAGTCACATTTCTATCAACAAGGCCTTGCCTGCCTCCTAATCCTCCTACTCCTTCCAAATAATACAGTCTGAGCCTCTAGGGGGCCATTCTTATTCCTGTAATCACAGCACATAAACCTGCTTTAATCGTACTCAGTCCGTGCTCCTTTTCTTGTCCCTCATACTCCCTTTACCCCCTCCACATCCCTTTACTTTGTCTGGTCCCACTCTTCACATTCTGAGTGGGAGAGAGAACATGCTTATTTTGGCGAGTCTGGGTTATCTCGCGTAATGTGATAATCTCCATTTCCATCCATTTTCCTATAAAGGACATTTCTGAATGTCCCTTTTTTTAATCCAGTTTTTATCCATTTTTATACTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGCACTCGTGGTCAGAGGACAATTTGCACAAGCTGGTTCTTTCCATATACCACTGTGTGGGTCATTAAGGGTCTAACCAGGCCTAGCAGCAACACATTGATCCACTGAGCCATCCTACTATCTGTGAACAATACTTTTTATATGGTAGTTGTCTGGTGACCCCCTTGATAGAGCCAGAAAGACATATTTTTGTTTTCTTATAGTTTTATGACAACTATGTTTTTGTAG
Seq C2 exon
GTTTGGAGTGTGGCACTTTAAGAACCAGAAACCCAAAGGCTCCAGGCCTACTCCTAAGAGTCCTGCTGGTTCTGGAGTCTGTGTCATGACCAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAGTCTATGGGACCTTCGCCCATTAAAGTTGAAGAGGATGAAGAAAAAGACAAGTGCCGCCCTAGCCTAGAGCTATCCCGAAAGCGCTTCAGGCAGTCTAGAAACCAGGACACTCTTGAGCCAATGGGACCTTCAACCATTAAAGCTGAAGAGGAGGAAGACAAGGACAAGGGCCACCCTAGCCTAGAGCTATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCATGACACTTTGGAACAGTTGGGACCTTCGACTGTTAAAGCTGAAGAGGATGAAGAGAAGGACAAGGGCCGCCCTAGCCTAGAGATATCCCGTCAGCGCTTCAGGCAGTTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTGAGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCTGAGATCCACACCAAGGAGCAGATTCTAGAGCTACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGGCCTGGGTACAGCAGCACTGCCCTGAGAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTGGATGAGCCTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039234:ENSRNOT00000001810:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.643
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=44.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]