BtaINT0166403 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030956 | ZSCAN21
Description
Bos taurus zinc finger and SCAN domain containing 21 (ZSCAN21), mRNA. [Source:RefSeq mRNA;Acc:NM_001035368]
Coordinates
chr25:36926823-36931834:-
Coord C1 exon
chr25:36931807-36931834
Coord A exon
chr25:36927312-36931806
Coord C2 exon
chr25:36926823-36927311
Length
4495 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGGTAATCATATTTTCATAGGTT
3' ss Score
5.65
Exon sequences
Seq C1 exon
CCAGCGGCCCGAGCGGCTCTGACTCACG
Seq A exon
GTGAGCCTCCTGGTCCACGGTTCGCGTGGCGGGCGGAAGAGGGAGTTTCCGCCGAAAGGGTGCGGGGAGGGACGAGTGGATTAGGCAGCTGTGGCCTCTGGGGACTCCCCAGACCGGTCCTGGGAGGGAGGTGGGAGGAGGCCTCTGTCCCTACCTAGGCCCAGATGGCGGAGGCCTTTGCTCTCGTGAAAGCATTTCCGCCCCTGCCCCCACCCCCGGGTTTAACAAGTGAAAGTTGGTCTCTTTCGCGTTACAAAGCAGTTTTTTTCTGCCTTCGGTGAGCCCAGTCGCCAGTCAGCTAGAACAGGGATGTTTTCTCTTATTTCCCGGGCTCTAAGTAGGCGGTCCAAATTCAAGGCTAATTGATTTAAGAAACTGAGCCTCGGAAGTCTTGTGTATTGTCTGAAATATGGGAGGGACTAAGTCCGTTGGGCATTGTTCAGGTTAGAAAGTACGTAACAGGAATCTGCTCAAGTTTAGAAACCCATTTTAGAGGGCCGTTTACTTACAGTTTGTCTAGAGAAAGGTGATCTGGTGAGTGAGGTACTTAGAAACTCCTGTTATAAAAGGAACAGTTGGAAGAGTTGTGAAGAAAAGAGTTAAGCAAGACAACTGTTTTCAGGTGTTGGAAGGCTACTACGGAGAAAGTAAGTTTTGGACTAGGAGCGAACTAGGATCAGTGAAGAAAGAGAAAAAGTGATGCAGAATTTGGTGCAGTTTAAAGAAGCAAGAAACTCAGAAAACTATCCAACAGTAGAAATCTGTGCCTCAAAATTATCAGATTTGCCTGCGTAGGAGTTTTCAGTTACAAAAGGGTAACATTTTAAGGGTAACAGAGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGTAGCCGCAACATTTTAAAAGTTCTAGGAGGAAAAAAAAAAAGCATTCTAGCAGCAATAGGTAAATCCCATTTAATTGTTAGAATTTATAATAATAACTTGGTTCATTTATGCCTGATCTTCTAGAATGGGATTTGGGACACTTTTGGGGGGCGTGTAAGCTTTGGGAAATTGGCCTAAAGAAGGGGAAAAAACTCGGAACAGAATAAACACTGCTTGTAGACTATGAACTTTTGCTCTTTGGCCATTTTGTGCTAAACAGTCTAGATAGCTTAAAGAAGATAGTTCATTGTGGTTGAAGACAATGTGAGTAATGAAACCTCTGTTTTCTATTCACATGCTTTTTTATTTTATAAACTATTTATTGAGAAAAATTGAGAAGCCAAGATCTGGAGGGCATCCCTAAGTGAACCTTTAGACAAACTCAGCATGACCAGATGTTTGGTCAAGACCAAATACTGGCTTTGACAGGGTAAGGGTGGGAATAAACCATTATCAGATTAAAAAAAAAAAAAAATTCTTTACCAGTCTGACAGGTGGAAGAAAGAGGAGAGACAAAGGACAAGGAAATCCAAGAGGCAACAGGGATTGAAATCCTTGAGGCCTTGTTTTTTGTCCTGTGATGATTTTGGCTTTTACTCCGTATGAGACACGAAGCCTTGAAAGGTGTGAACAGAGGAATGATGTGATCTGATGTATAATATTTTATAGACAACCAAGACTTCCTTGGTGGTCCAGCGTTTAAGACTCTGCGCTTCCACTGCAGGGGGCTTAGTTCCCTGTGAGGGAACTAAGAGCCTGCATGCTGTGTGGTGGGGCAGAAAAAAGAAAAAAGGCACCGATGATGGACTGGGACAGCAGTGTTGGAGGAAGTGAGATGTGGTTGAATTCTGAATCTCTTGGGTGTAGAGCTAACAAGATTTACTCCTGAATTGTGTGTAGAATGTGAAAGAGGAGTCAGGAATGACCAGGGTTTTTTTGCTCCAGAAAACAGAACAGTAGAATTGCCATTCACTGAGATGAGTAGCTTTGGAGGAATGATGGGAAGTGCAGTTTTGGACACGTTAAGTTTGGGAAGCCGCTGGACATGCTGGTGGCAAGGTCAAGTGGGTGGTTGGTTGTAAGAGTCTGGCGCTCAGAAGAGAGGTCCAGGCTGGAGAGTGTGAATTGGCGAATGTGAATAAATAGATGGTAATTAAAGCCACGCAACCAGATGATATCAAGGAGAGTGAGTGCAATTAGGAAGAAGGCTCCAGGTGCCCAGCCTGCCACATGTTGGTGGCCTTACTGAGGCATGAATTTGAATTGCGGGCACTGCAAAACTGGTGTGCTACAATAAATCACTGAACTACTGGGCTCAGTTACTACTGACGGTACTCAGCAGTAACATTTAGGAAAACTTTCTTCCTAAAGTGTTTTGCAAAGGCAATGGTTTGATGTAGTGGCATCTGTGTTTGGATTTGCTAAGTTCAGGGTAACAGTTCCCATGTGAACGTGATGCAGGACACACCCTGTTTAATGCCTCCTGTGCCGCGTTATAACCCCTAGTGTCTGAATTTCCCAGGCTGAATCCCAGAAGCTGAGCCACCCAATGGAGAGTCCCTCTGTTCTTGGGGTGCCCTCCTCTGGCCAGAGTAGGAAATTCTGTAATAGTTAAGTTAGAGTTGTTCCTACGTGCTAGAGACAAGACGGCAGTGCTTCCCTGCTCAGTTTTCAAGTAACCCTCATCCTGGGAGCTTCAGTGGCATACTGACTGCAGAGAGCAGCATAAAGGAGTGTTCAGTGCTGACTCTGGTCCTGTGCAGGAGCAGTGGTGCCTTGTAGGATGCTTCAGAGTTGGGGTACCATAGAGGGGAGTTCAGCTATCATCCCTAGAATTCTGCACGAATTAGCAGCTGATAATTACCAACTTTCTCATAAAAGCGAGGTTGCATATTGAGGTTTCATTCTTAGAACTCCATTTCCTGTATTTTTAATTACCCAAATTGATCACAGAAATAAAGGGGAAGAGTCATATAAAATATGTTTTAAATACATATTTCCCAAATGTGTAAAGCTAAATACATGATATAAAAGCTGTAACAGACATGTACCTTTGTTGGAAGGTTCTGCATGGGCTGGAATTGGTGCTTTTTTGTTTTCCTGGGTTGTTTTTTGTTTTTTTTTTGAAGACCATAGAATTTGGGCATTAGAAGTAAAATCTATCTTGGTTTGTTAAAAACTGCTTATGATCCTTTAAAGATTTTATGATTTTTCTAGTTACAAAAGTAATATCCACTAAAGAAAATTTAGAAAATGAAAAAGACTTTTAAAAATTGAACTCATACATAATTCTCTATCCCAGAAATATCACAGTTAGTGTTTTTCCTTCATGGTGATTATGTGTATATTGTGTGTGTGTGTGTGCACGATATTTCAGGTGCAGTCAGACCAGATCCATGGAGGCTGACATGCATGTTAGAAATGAGCATACTTTGCTGCATGGCTCAGGAAACTCAGACAGGGGCTCTGTATCAACCTGGACGGGTGGGGTGGGGAGGGAGGTTCCAAAGGGAGGGGATATGTCTTTGGCTCCTTATTGAGACTGTTGGAATTTTCCTTACTCAGATCCAGTATAAGAACACATACATGACAGAAAAGATGCTGCTTAGAGTTTGAAAACATGCTTGTCAGGAAGGCCAGTCATAAGCATGTAAGATTAATTAACTTACGGAGTTTTCTTTCAGAGCATATTTAATAATAGGGTGATTCTGTTGTCGATTCACTTTCTACTTTTCCGTCTCCCCCTTTCTCTGTCCCCTACTGGTAATCACTAGTTTGTTCTCTGTATGTGTGGGTCTGTTTCTTTTTTGTTACATTCACTGGTTTTACTGTTTAGAGTTCACATGTAAGTGACAATGTACAGTATTTGTTTTTCTCTCTCTGGCTTGTTGCACTAAGCATAATACCCACCAAGTCCATTCATCCATGTTGTTGCAGATGGTTCCATTCTTTTTTATGGCTGAGTAGTATTTGCGCACGCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAGTGGTTTAGTCTCTAAGTCGTGTCCAACTCTTTGTGACTTCATGGACTGTAGCCCACCCACAGGCTCCTCTTTCTGTGGGATTTCCCAGGCAAGAAGACTGGAGTGAGTGGCCACTTCTCCAGGGGATCTTCCCCACCCAGGGATTGAACCTGGATCCCCTACATTGCAGACAGATTCTTTACCAACTGAGCCACCAGGGAAGGCCCATGTATATTTTTGAATGAGTGTTTTCATTTTCTTCAGCTAGCTATGCAAAAGTGGAATTGAGCCACAGATCACTCTTTCAGAGAATGAAGACAAAATCAGATCAAAACAGAATATTGCTGAGCTGACGCTAGCAAGATTTTTGATAGTCATCGTTATATGGTATTTTTATAGTGGCTATAATTTCCACAATTTTTTAGAGACCAAAAAGCATACTTTTTCTTTTGATAATTTTATGGTAATCATATTTTCATAG
Seq C2 exon
GTTTAACGTGTAGCCCTAAAGAACCAGAAACCCACAGGAACCAATATTCCTGCTCCACGGAATCCTGTCTGTAGTGACAGCTGTTTCTGGAGTACCTCCGAGATGAAGGTGCTGGGCATGGCCACAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGGGCCTGTGATTGTGAAGATTGAGGAGGAGGAAGAGAAAGGGAAGCGCCTTCCCATGGAGATATTCCGCCAGCGCTTCAGGCAGTTTGGGTACCACGACACCCCTGGCCCGCGGGAGGCCCTCAGCCAGCTCCGGGTGCTCTGCTGCGAGTGGCTGCGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCACTGCCCAGAGAGCGCCGAAGAGGCCGTCACTCTCCTGGAGGATCTGGAACGGGAGCTGGATGAGCCGGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030956:ENSBTAT00000022287:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.315
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=75.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]