MmuINT0180848 @ mm9
Intron Retention
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138558133-138566918:+
Coord C1 exon
chr5:138558133-138558235
Coord A exon
chr5:138558236-138566205
Coord C2 exon
chr5:138566206-138566918
Length
7970 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TGGCAACTATGTTTTTGTAGGTT
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGGGCGGGGCTCTGACGCGCTTCCGGTGGTGCTGTCGTTCAGCCGCTGTGAGGATTCCAGACTCCAAAGCGGTTCTGAGTCACGGTGAGCCTGCGAGTCCCAG
Seq A exon
GTTAGCCTAGCGGTCGGGGAGCGTTGGCCAAAAGATTTCGAGAGGGTGGGACGGGTTTAGCGACTGTGGTTCTGGTTCGGGGAGTTCCTCCATGGTGGTTCTGGGAGATTGAGGAGGAGCGCCCCGCCCAGCCGTCGTCGGCGCCCGCTCTAAGGAAAGGCTTTTCCACCCCCGAGGGCTCCCTGGAACAAAACCCTGATTCTTTTGCTTCCGGAATCGCATTTCTAGTCTCTCCGTTATTGTCTGTTACCTGACGGAAACTGCCCTCTTTCTTCCCCAGCAAGAGCCCTGAGATCTAAACTCAGAACTAATTGTTAAGAATAAGCCCAAGTGTAGAAACCTCTGAAAACCCGAATCTCCTCAGTCTTGAGTCTTGTCCAGTCCAGGCGGGGAATTGGTCCCGGTGGGCTTTGTGCGCACTGGACAAGGATTTGCTCAAGTCTGGAAAGATTTTTAGACGATCGTTTGTAAAACGCGTATAGGATAGAAAGGTGATTGATTTATTTGGTGGCTGACATAGTTGGAAATCTGTTGAAAGGGGACACTTAAAGAATTGTGAACAACAACAACAAAATCAATACAGGAAAATTGTTTTTCAAGTGGTGGAAGGCTTCTGAAGAGAGACTGAGTATTGGTTCAGGGCTATTGAAATGATGCAGAATTTGGCTCACTCTGAGCTACTAGATCTGCCCAGTAGTTATGCTCTTCAGAATTATTGGCCTGCCTGGAAGCTTTTTGAAAATTAGTTTGCTCGGTTTGAGACGGGGTCTTACTGTATGGCCTACACTGGTGTATAATTGGTGATCCTCCTGTCTCTGTTCTCTTCAGTGCTGTAATTACAGGTATGCACCACCACGACTTCAGCTTGGAGTTTCCAAGTGCAGAGTGTCTTAAGGGCATTATCTACTACAAGGTAATAATTGCTGTTCATTTGATGCAATCTGTGATAGTTTGATTTGTTTACACTTCGTCTTGCACAGAATGAATTTGAGGCTGATTAAGGGAGTGTGTGTGTGTGGGGGGGGGACTTATAAACTGTAGAATTCGCATAAAGGAGGGAAAAATTGGGAAGTGACCAAAAGCCTGCTGCTAGACTTCGAGAGTTAGGTTTTTATTTTTTTACTCTGTGTGTGTGTGTGTGTGTGTGAGTCAAAGGATAGTTGGCATAGTTGACTGCTTCCCTTCCATTACATGGACACCAGTCTCAAAACAGGCAGCAGGTCGGTTGCATTTGTTACCCACTGAGCCATCTTGTCAGTTGAGTTAAACCTTTAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACTTGGTGGCTCATGGCCATTTGTAATGTGATCTTATGCCCTCTTCTGGTGTGTCTGAAAACAGCAACAGTGTACTCTTAGACATAAAATAATACATGAATCTTTAAAAACAAAACAAAACAACCTTTAGATAGCTTTGGTTTTGCTTTTTTGTTATTTTTCAAAACAGGGTTTCTTTGTGTTGCCCTGTCTGTCCTGGAACTCTGTTGACTATGCTGGCTTCTAACTCAGAGATCCTCCTGCCTCTACCTTCCATGTGCTGGGATTAAGGTGTACATACCACACCCTGCTTTAGGTAGCCTTTTTAAAGTTTTTTTTTTTTTTCTATGAAAGTGTTAAATTAGGCCTGTTTTTCTACCCACATACTTTTTGATTTTATGACTATTTAAGGAATTTTCAGAAACCAAGACCTGGAGGGCATCTTCACATGGCAAGCTCAGCATTACCAAATGTGAAACATTGGCTTTCTTTGTGTGCAGGGAGCAAGATGCCAAGATACTTTAGTACCAGATTTTTTCTTTTCTTCTTTTTGGTTTTTTGGTTTTTTTTTTGGTTTTGTTTTGTTTGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCGGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACCTGGCCAGATTTTTTTCTTAAATCTTGCCAAAACAAAAACAAAGCAAAAGACAACATGTCAGTCATGTGGAAGTTTTTCTTTTTTTCCTACTTCTTAGCCTATCTTCCACCCTGTTCTTCTCCCCACCTCCTTTTTCTTTTTTCATTTTCTTTTGTTTGTTTTAGAGAGAGGGCACTGCTGTGCATCTCACCATGCAGCTCAGGTTCCGGCTTTGACCTGTCTCAGAATGCTGGGATGGCAGCCAGCTGTCCCATTGCAAGCATAAAAATCTCACTTATGCATGCTCTTACTAAATATACTCCAAGAGTGAGAGGACGAAACTCACCTTTCTTTGCTTCTCATCTCCCACTAAGTAGAAAGCTGCAGGAAGGCAGGGTACACCCAGTGGTCAAGTGGCAGGTGGTCAGTTAGTCAGAAGATATTCTAAGGAATCAACTGGGAAATACCAAATGTTCAAAACTTTTTAAGCATTTTTGTTTGTATCACATATTTTGATTGAATTTTTCTATGAAATTTTTTTTTCAGCGATATATATCTTTGTCAGACTAAATAACTGTATGTTGGGCTTGGTGACACAGCTTTAATCCCATCACTCAGGAGGAGAGGTAGGCCAGTCTCTTATGCCTTCCAGGCTATGCAGTGAGACCTTGTTTTCCCATCCACTCTTCTGTTAAAATATATATATATATATATATATATCTAGGGGGTGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGATCCTGAGTTCAATTCCAGCAACAACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTCAAGACAAATACAGTGTACTCTTTTTTTTTTTTAAAGATTTATTTATAATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAGCCACCATGTGGTTGCTGGGATGACCTTTGGAAGATCAGTCAGTATTCTTACCTGCTGAGCCATCTCACCAGTCCTACAGTGTACTCTTATAGATAAAAAAATAAAATAAAATAAAATGTAACTGCAGGGCTACAAAAGACCGGTCAGCCCATAAACAGGCTGTCCCCAGGCATGCTGGCCTGAGTTTGATTCTGGAACCCACATGGTGGAGGGAGAGAACTGAAAGCTCTGACCTCTAACCTCTGTACATACTATGGCATATATACCTCCTCCCCTCCCCTACACACACACACACACACACACACACACACACACACACACTTCATTAATTATAAAGGGAAGAAACTGGAGAGATGATTCCGTGGTTAAGAATATGTATTCCTCTTGGCAGAGGCCTCACATTTGGTTCCCAACACCCATGGTGGGCAGGTCACAAACGCCTGTATCTCTCAGGTTTCCCACGCTGATCTCTTCAAATGCACGAGGGTGTGTGCTGTGTGTGCATGCACACATACACACACATATACAAGTATTGTTAGGTTTTTGTTTTTTTTTTCCCACTTTCACCTAAAGACACTGTCTTAGTTAAGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCAAGTCTTAATAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATTAAGGAGGGAGCATGGCAGTATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATGTCTTCATCCAAAGACTGCTAGTGGTAGACTGACTTCCAGGCAACTAGGGTGAGATCTTATACCCACACCCACAGTGACACACCCATTCCAGCAAGGCCACACCTTCAGATGGTGCCACTCCCTGATCCAAGGATATACAAACCATCACATTCCACTTCCTGGTCCCCATATACTTGTTCAAAAACATGAGTCTATGGGGGCCATACTTAAACATAGCATAATGCAAAATGTATTTAGTCCAACTTTCAAAGTCCTCATAGTCTATAGCAGTCGCAACAATGTTAAAAATCCAAAGTTCAAGGTCTCTTCTGAGATTCATTCAATTTAATTAACTGTAATTCCCAAAGCAAGGCAGGAAACCAGCTGGGCAAACTCCAAACTCTGCATCTCCATGGCTGATGTCAAAGCGTCTTCAGATCTCCACTCCTTTTTCATCTCTGTTGACTGCAACAAACTGCTTTCTCCTGGGCTGGTTCCACTCCCTGTTAGGAGCTTTCCTCAGCATGTATCCCATGGCTCTGGCATCTTTAACATCCTTGAGTCTCCAAGGCAATTTCAATGTTACAGCGTCTTGTTTCAGTGTCTGGGATTCCACTTGATCTTTTGGACTCCTCCTAAGGGCTGGCATCACTTCTCCAGCTCTGCCCTCTGTAGCACTCTAAGCTTAGGTTGATCCACTCCACTACGGCTGCTGTTCTTGGTGATCATCCCATGGTACTGACATCTCCAATACACTGGGGTGTTCCACTCCAACTAGGCTTCACCAATAGCCTCTCAAAGGCTCTCTTCAGGGTGCCAAGCCTCAAATCCTTTGCACGACCCCTTCAGTCCTGGGCCATCAACTACAGCTGAGGCTTCACCTTCTCCAATGGCCTTCCCTGGCCTCTCACAGTGCTAAGTCTCAGCTTCTCTCCATGATCCCTTCATTCCTTCACAAGCAGTACCACCTGAGTGACTCTTACACATTACCAAGTCCAGCCGCAGCATGAGGTACAACCTTGGGTATCTCTGGAACACAGCTTCTTTGTGCTCCCAGAAAACAATTTCCAGAAGATTTCACCTCAGTGATGCTGGTCTCTTCTTAATTACCTCTAATTCCTTAGCTCCAGCTAACCAGCATCAATTTTCCCAGTAGTTCCTTCCATTCTTAACTCTAGAGCCAGAGCCGCATGGCTGAAGCCGCCGAGTTCTGCTGCTTAGAGGAACTAGAACATGATCCCCTTGTACTATTACATTATCACTGGCTTTATCTTTTCTAAATCCTTCACTGCCTAAGCTTGGCTATCCTGGTTCTTGCTCTGTAGATTGACTTGAATGCAGAGATCAGCATGCCTGTCTCCTGAGATTAAAGGTGTGTACCACCATGCCTGGATTTAATTTAGCTGGGTAGGATCTTGCCTCAAGGTCCCACTCCCTTAATCTGTTATCTCCTAGAACACAGGAATTTGTTCCATTTCACTTCCTGGTACCCCTTTATTACTCGAACCATATATTTTATATTTTTCCTTTCTAAGCTTGCTATGCTTCTTCAAACTTCTCTTCATAAGACTTAACCAGAGAACAAAGTCTCTGCTGGGCTTCTTTGAAACTTCTTTTGTCAATGCAATTAATCCAAGTCTCTTCACCTTAGCCTCAGGCAAACTTTTCAGACAAGGGCAAAAAGTAGCCACATTCTTCTCCAAAATACCACAAAACCAGTCTTTATGCCACATTCTGAAATTCTTCTCCTTTGAAATCTCTTGGGCCAGGTCAACACAGTTCAAATTACTCCCAGCAACTAAGTCTTCCATATTCCTACTAGGATGACCCATTAAGCCCATTTAAAGCATTCCACTGCTTTCCAAATCCAAAATCCCCAAATCCACATTCTTTCAAATAAAAGCATGGTCAGTCCTATCATAGCAATACCCCACTTCTGGTACCAACTTCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCAAGTCTTAATAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGAGGGAGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAAGAGCTGAGCGTTCTATGTATTCATCCAAAGACTGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCCAACAAGGCCACACCTTCAGATGGTACCACTCCCTGGTCCAAGGATATACAAACCATCACAGACACATAAAAGAAACTTGAATATTCGATTTGGGAAGTGACTCAGTTGGTAAAGTGTGTTCTGTACAAGCATGACTACCTGAGCCCACAGGTAAAAAGCCCAGATATGTCTGCTTGTACCTAAAGTCTTAGTAATGGAAGGGCAGAGACTGGCAGAGACTTGAGTTCACTGGCCAGTCAGCCAGCCTAGCTGGTCCATGCACTCCAGGTTCAATGAGAGACCCTGTATCAAAACAATGAGATGAATAGTGATAGAGGAGGACCTCTGACATTGACCTCCGGCCTACTACACACACATGCATGCACAGGCAAGCTCACCTGAACATATGTACACACACACACACACACACACCCTCACACAGTCACACAAACCCAAAAAAAAGGAAAAAAAAATTAATATGTTTTCCTTAAAGTAAATCAGGTAAGATTCAGTGTGCATCCTAATTAGGTTTTCACTATTTTTGTTTTTAAATTTTTGTTCATCTATTTCTTTGGTGCTAGGGGTGGAACCCAAAGCTTTGTATCTACAAGGCAAATACTCTACTTTTGAACTATCTTCCTAACTCTTATACTCCATTATTTTTAATAAGCTAGATAATTCCAGCCTGGAACATACAAGCTCATGCTGACAAACACAGTCATTTGACTACTCTACTTTTTTTATGTTCAGACAGTATTAGATAACTTGCTGAAATCATAGAAACTATGATACCTATAGTCATAAGATGTGAAACAGTATTTGTAGCAAAGATCTATTTTTAAAATTATGCCACTTTAGCCGGGCGTGGTGGTGCACACCTTTAATCCCAGCACTCGGAAGGCAGAGGCAGGCAGATTTCTGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAAAAAAAAAAAAAAGCCATTCTTAGGGAAAATAGATATATCTCAGTCAAGTGAAAGTAGGGTCTAGTTAGCTGACTCCAGAGTGATTTCAAACAATATATACTTTATACTAATAGTATTTTGTGTGTATTACTTATACAACGTAATAGGCTTCATTATGATACTTCCATGTATACCTTCTTAGTCTCTTGTATTGCTCTAAGAGACCATGACTAAGCCAACTCTTACAAAAGAAAGTACTTAACTAAAAGCTAGTTTACTGTTTTAGAGGTTAGGTCCGTTATCATCATGGCAGGAAGCATGGTGGCATGCAGGCAGGCACTGGAGCAGTAGCTGGGAGCTGCATTCTAATCTGTAGGCAGAGAGAGCAACACTGGGTCTAGTGTGGGCTTTTGAAACCCCAAAGTCCACCCCCATAACACATTTCTACCAATGAGACCACACCTCCTAATCCTTCTAATTCTTCTAAATAGTACAGTCTCTGAGCCTCTAGAGGGCCATTCTGACTCATACAGTCACAACACATAGAACTGCTTTGATCATACTCAGTCCTTAGTTCCTTGTCTTGTCCCCTCATACTCCCTTGACTTTGATGTCTAGTCCCATTCTTCACATTCTGCATAGGAGAGAGAACGCGCTTATTTTGCTGAGTTTGGATTATCTTGCTTAGCATGATCATCTCCATTTCCATCCATTCCCATCCATTTTCCTATAAAACACATTTCTGAACAACTGTGTTTTATATATATTTGTGTGTGTGAGGTGCACATATGGTCAGAGGACAATTTGCACAAGTTGGGTCTTTCCATATACCACTGTGTGGGCCACAAGGGCCAAACCAGGCCTACCAGCAAGCACTTTGATCCACTGAGCCATCCTACCACCTCTGAACAATACTTTTTATACGGTGGTTGTCTGGTGGCCCCTGTGATAAAAACCAGAAAAACATATTTTCATTTTTTGATAATTTTATGGCAACTATGTTTTTGTAG
Seq C2 exon
GTTTGAAGAGTGGCACTTTAAGAACCAGAAACCCAAAGGTACCAGGTCTACTCCTAAAAGTCCTGCTGGCTCGGGAATCTGTGATGACTAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAATCTATGGGACCTTCGCCCATTAAAGTAGAAGAGGATGAAGAGAAAGACAAGTGCTGCCCTACCCTAGAGCTATCCCATAAGCACTTCAGACAGTCTGGGAACCAAGATACCCTTGAGCCAATGGGTCCTTCGACCATTAAAGCTGAAGAGGATGAAAGCAAAGACAAGTGCCGCCCTAACCTAGAGATATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCAAGACACTCTTGAGCAGTTGGGACCTTCGACCATTAAAGCTGAAGAGGATGATGAGAAGGATAAGGGCCACCCTAGCCCAGAGATATCTCGACAGCGCTTCAGGCAATTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTGAGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCCGAGATCCACACCAAAGAGCAGATTCTAGAGCTACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGACCTGGGTACAGCAGCACTGCCCTGAAAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTTGATGAGCCAGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-Zscan21:NM_001044703:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.662
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=44.8),PF034808=SBP_bac_7=PU(67.9=26.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: