HsaEX0074565 @ hg38
Exon Skipping
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13104]
Coordinates
chr7:100049774-100057405:+
Coord C1 exon
chr7:100049774-100049841
Coord A exon
chr7:100051478-100051610
Coord C2 exon
chr7:100056911-100057405
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTGTATTTTTTAGTAG
3' ss Score
6.67
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACTTCCGGGTGCGCGGTCCCGAGGTACGCGGTGCGGTCTCCCGGTACCCGGAGCGGCTCTGATTCATG
Seq A exon
TAGAGACGGGGTTTCACCGTGTTAGCCAGAATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACGGCGCCGGGCCCCCTAGGGATTTTCAG
Seq C2 exon
GTTTAACTTGTGGCCCTAAAGAACTGGAAACCCAAAGGAACGAATATTCCTGCCCCACAGAGTCCCATCTTTGGTGAGGCTGTTTCTGGAGTTTACATGATGACCAAGGTACTAGGCATGGCCCCAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGTGGGGCCTCTGATGGTAAAAGTCGAGGAGAAAGAAGAGAAAGGCAAGTACCTTCCTAGCCTGGAGATGTTCCGCCAGCGCTTCAGGCAGTTTGGGTACCATGATACCCCTGGACCCCGAGAGGCCCTGAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCATTGCCCGGAGAGCGCTGAAGAGGCTGTCACTCTCCTCGAAGATCTGGAGCGGGAACTGGATGAGCCAGGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.217
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGCTCTGATTCATG
R:
CGGAACATCTCCAGGCTAGGA
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development