HsaALTA1043271-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127717334-127717772:+
Coord C1 exon
chr9:127717334-127717424
Coord A exon
chr9:127717629-127717667
Coord C2 exon
chr9:127717668-127717772
Length
39 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTGGGTCCCCTCACCCTCAGGTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
CTACTCCAGAGGCCAGCAGTGCTTGGAGCAGGCAGACTGGGAGACAGCTGTGCTGCTCTTCTCCCGCGCACTCCACCTGGACCCACAGCTG
Seq A exon
GTGGACTTCTATGCCTTACGGGCTGAGGCCTACCTCCAG
Seq C2 exon
CTCTGTGACTTCTCCTCGGCCGCCCAGAACCTGCGAAGGGCCTACTCATTACAGCAGGACAACTGCAAGCACCTGGAGCGCCTCACCTTTGTGCTCTACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(46.3=64.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCAGAGGCCAGCAGT
R:
GGCCGAGGAGAAGTCACAGAG
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains