MmuALTA1030650-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32773665-32774072:-
Coord C1 exon
chr2:32773982-32774072
Coord A exon
chr2:32773743-32773808
Coord C2 exon
chr2:32773665-32773742
Length
66 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CAGGGTCTCTTTGCCTTTAGGTA
3' ss Score
9.37
Exon sequences
Seq C1 exon
CTATAACCAAGGCCATCAGTGCCTCCTACAAGAGGACTGGGAGATGTCTGTGCTGTTCTTCTCCCGTGCCCTCCACCTGGACCCCAAACTG
Seq A exon
GTAGACTTCTATGTATTCCGTGCTGAGGCCTTCATCCAACTCTGTGACTTCTCCTCTGCCCTCCAG
Seq C2 exon
AACCTCCGCAGGGCCTACTCCTATGACCCAGGGAATAACAAGTACCTGAACCGGCTGGCCTTTGTGCTCTACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-7-7,7-6,7-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.1=100)
A:
NA
C2:
PF134141=TPR_11=PD(45.6=64.6),PF134141=TPR_11=PU(13.4=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCAAGGCCATCAGTGCC
R:
CTGTAGGTAGAGCACAAAGGCC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types