RnoALTA0042631-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11809952-11810353:-
Coord C1 exon
chr3:11810263-11810353
Coord A exon
chr3:11810092-11810095
Coord C2 exon
chr3:11809952-11810091
Length
4 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GGGGGTCTCTTTGCCTTCAGATA
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTATAACCAAGGCCATCAGTGCCTATTACAAGAGGACTGGGAGATGGCTGTGCTGTTCTTCTCCCGTGCCCTCCACCTGGACCCCAAACTG
Seq A exon
ATAG
Seq C2 exon
ACTTCTACGTATATCGTGCTGAGGCCTTCATCCAGCTCTGCGACTTCTCCTCTGCCCTCCAGAACCTCCGCAGGGCCTACTTCTATGAGCCAGAAAATGACAAATACGTGGATCGGCTGGCCTTCGTGCTCTACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.1=100)
A:
NA
C2:
PF134141=TPR_11=PD(45.6=64.6),PF134141=TPR_11=PU(12.5=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGTTCTTCTCCCGTG
R:
TTCTGGAGGGCAGAGGAGAAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]