HsaALTA1046524-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38198722-38216151:+
Coord C1 exon
chr3:38198722-38198863
Coord A exon
NA
Coord C2 exon
chr3:38216098-38216151
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTTTTTTTTTTAAAGAGATG
3' ss Score
-6.61
Exon sequences
Seq C1 exon
GTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAG
Seq A exon
NA
Seq C2 exon
ATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATGGCTCAGTACAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-22-21,22-20,22-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
NA
C2:
PF0006920=Pkinase=PD(12.2=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGAAGTACTGGAAGGGC
R:
TCTGTACTGAGCCATCTTCTCCA
Band lengths:
103-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains