MmuALTA0012645-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119182047-119193805:-
Coord C1 exon
chr9:119193664-119193805
Coord A exon
NA
Coord C2 exon
chr9:119182047-119182100
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GTGTTTTTTTCTTTGAAGAGATG
3' ss Score
-3.74
Exon sequences
Seq C1 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
Seq A exon
NA
Seq C2 exon
ATGTGAAAGCTGGAAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-8-9,8-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACTGGAGTACCTGCA
R:
CAATCTGCACAGAGCCGTCTT
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: