RnoALTA0027810-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127962081-127971618:-
Coord C1 exon
chr8:127971477-127971618
Coord A exon
NA
Coord C2 exon
chr8:127962081-127962134
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GGTGTGTTTCCTTTGAAGAGATG
3' ss Score
-5.96
Exon sequences
Seq C1 exon
GTTCCGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGGGCGGAGTTTTGGATGAGTCGACCATCGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCACAAGAACGGGCAGATCCACAG
Seq A exon
NA
Seq C2 exon
ATGTGAAAGCTGGGAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-9-14,9-13,9-12-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACTGGAGTACCTGCA
R:
CAATCTGCACAGAGCCGTCTT
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]