HsaALTA1046893-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:124975247-124976186:-
Coord C1 exon
chr9:124976114-124976186
Coord A exon
chr9:124975343-124975389
Coord C2 exon
chr9:124975247-124975342
Length
47 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATCTCCCTAACTGTGAATAGTGC
3' ss Score
3.64
Exon sequences
Seq C1 exon
AATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAG
Seq A exon
TGCTGATGTCTCTCTGTGGGAGATGGCATTTTACTGCTACTTCCCAG
Seq C2 exon
CCAGAAGTCCTGTCTGCTGACATAGTTTGACACAGGAAGTGATGGTCAGCATTTGAATGCCTGAGAGAAGCTGGAGGCTTTCACCGTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-37-43,37-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(77.4=96.0)
A:
NA
C2:
PF120703=DUF3550=PD(16.0=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGCCACTAGTCTGCTT
R:
AACAACGGTGAAAGCCTCCAG
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains