HsaALTA1050453-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20055943-20061576:+
Coord C1 exon
chr22:20055943-20056013
Coord A exon
NA
Coord C2 exon
chr22:20061530-20061576
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGCTGATTGCTCCTCACAGGCA
3' ss Score
6.92
Exon sequences
Seq C1 exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAG
Seq A exon
NA
Seq C2 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-42-31,42-30,42-29-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PD(12.8=54.5)
A:
NA
C2:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAAGGGAGACGTCAT
R:
CTTCCTCCAGGGAGTCTCCAG
Band lengths:
118-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains