MmuALTA0004993-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18303683-18308040:-
Coord C1 exon
chr16:18307970-18308040
Coord A exon
NA
Coord C2 exon
chr16:18303683-18303836
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTGACCTTCTTCCTATAGGAA
3' ss Score
9.68
Exon sequences
Seq C1 exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
NA
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGACGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-28-29,28-28,28-27-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(15.9=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCTGAGCCTATTGTCT
R:
TGCTCCACTGCTTCCATGAAG
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types