RnoALTA0039741-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86834018-86837730:+
Coord C1 exon
chr11:86834018-86834088
Coord A exon
NA
Coord C2 exon
chr11:86837577-86837730
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTGACCTTCTCCCTATAGGAA
3' ss Score
10.44
Exon sequences
Seq C1 exon
CACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
NA
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245-20-20,20-19,20-18-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCTGAGCCTATTGTCT
R:
CTGCTTCCGTGAAGAGTTGCT
Band lengths:
111-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]