HsaALTA1051822-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35245262-35254402:+
Coord C1 exon
chr18:35245262-35245351
Coord A exon
chr18:35254232-35254288
Coord C2 exon
chr18:35254289-35254402
Length
57 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGC
5' ss Score
2.31
3' ss Seq
ATTTCCCTTTTGCTTCTTAGAGT
3' ss Score
9.4
Exon sequences
Seq C1 exon
ATTGTGAGAACAGTGAAACAGCAACAAAAGAGGGCATCTCAGAAGAAAAATCACAGGGACTCCCTCAGGAACCTTCATTTCGAGGAATTA
Seq A exon
AGTTGTCCAGACCTCCCAAAGCTTCTTCAGCTATCCGTTGGGAATGTGTTTCTCCAG
Seq C2 exon
GAAGTTTTCCCGGCGATATCATAGCTGCTGAGGCTACACATTCAACAATTTCTTGCTTTGCCATCAACACTTTGCCAGCCACCATCCTGCCATCTAAAAATGTGAATAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-16-11,16-10,16-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCCCTCAGGAACCTTCA
R:
TTTAGATGGCAGGATGGTGGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains