HsaALTA1051822-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35245262-35254402:+
Coord C1 exon
chr18:35245262-35245351
Coord A exon
chr18:35254211-35254288
Coord C2 exon
chr18:35254289-35254402
Length
78 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGC
5' ss Score
2.31
3' ss Seq
ACTGATTTTGTTCCCTGCAGCAT
3' ss Score
9.77
Exon sequences
Seq C1 exon
ATTGTGAGAACAGTGAAACAGCAACAAAAGAGGGCATCTCAGAAGAAAAATCACAGGGACTCCCTCAGGAACCTTCATTTCGAGGAATTA
Seq A exon
CATTTCCCTTTTGCTTCTTAGAGTTGTCCAGACCTCCCAAAGCTTCTTCAGCTATCCGTTGGGAATGTGTTTCTCCAG
Seq C2 exon
GAAGTTTTCCCGGCGATATCATAGCTGCTGAGGCTACACATTCAACAATTTCTTGCTTTGCCATCAACACTTTGCCAGCCACCATCCTGCCATCTAAAAATGTGAATAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-16-11,16-10,16-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACAAAAGAGGGCATCT
R:
TTAGATGGCAGGATGGTGGCT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains